Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76520 455 / 7e-160 Auxin efflux carrier family protein (.1.2) AT1G20925 454 / 2e-158 Auxin efflux carrier family protein (.1) AT1G76530 383 / 3e-131 Auxin efflux carrier family protein (.1) AT5G65980 357 / 3e-121 Auxin efflux carrier family protein (.1) AT2G17500 350 / 2e-118 Auxin efflux carrier family protein (.1.2.3.4) AT1G71090 202 / 4e-60 Auxin efflux carrier family protein (.1) AT5G01990 199 / 2e-59 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016046 [exp] 681 / 0 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10004287 [exp] 444 / 3e-155 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10030715 [exp] 392 / 8e-135 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 360 / 4e-122 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 354 / 6e-120 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 351 / 9e-119 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 329 / 7e-104 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035610 [exp] 197 / 1e-58 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10019229 [exp] 199 / 2e-56 AT5G23490 667 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 537 / 0 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 453 / 2e-158 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 423 / 6e-147 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 421 / 5e-146 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 401 / 2e-138 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 396 / 2e-136 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 359 / 1e-121 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 271 / 9e-87 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 195 / 7e-58 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 184 / 7e-54 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10025166 pacid=23167768 polypeptide=Lus10025166 locus=Lus10025166.g ID=Lus10025166.BGIv1.0 annot-version=v1.0 ATGGCGGTCTTAGATCTGTTCATAGCATCAACCATACCAGTGCTCAAGGTGCTGATAGTCACTGCACTTGGCACTTTCCTTGCTCTTGACCCTGTCAATG TCTTGGGTCCCGATGCCAGAAAACACGTCAACAATATTGTGTTCTACGTGTTCAATCCAGCACTCATGATAGCCAACCTGTCCATGACCATAACTTTCCA GCAGATGGTCAAACTATGGTTCATGCCGGTCAACATCCTGATAACCTTCGTGGTCGGATCGGTGTTGGGGTGGGTTGTCTTACAGCTGACTAGGCCCCCA CCAAAGCTGAGAGGGCTCATAGTAGGGTGCTGTGCAGGTGGGAATTTGGGGAACATGTTCTTGGTGATGATCCCAGCCATCTGTAAAGAGAAAGGCAGCC CCTTTGGTGCCCCTGATGTTTGTCAGTCCTATGGTTTGGCTTACGTCTCTGTCTCCATGGCCATGGGAGCTATTTATCTGTGGACTTATGTGTACAACAT CATGCAAGCATCAACGACGGCATCGATGGCAGCAGTTGAAGATGCAGATAAGCTCCCAATCAGTGTGGATACAACGACAGCATCATCCAAAGATGACTCG TTTGAACATCCGCTTCTTGAGGCAACTCCTAAGTCAACTCGTGATGGATGCTGCTTGTTTCCTGAGAAGCTGAAGCAAGGACTGAGTAACACTCTTGGGA GTGTTAACTGGAAGACCCTCTTTGCACCTTCCACCATTGGTGTGATTATTGGATTCACGATTGGGCTGACCCCACCAATAAAGAACATGCTGGTGGGGGA TGAAGCTCCTCTTCGTGTTATTCAAGACTGTGCCGCCTTGTTAGGAGATGCAGCAATCCCCACTCTAACCCTGCTTATGGGAGCTAATCTGCTTAGAGGG TTGAAAGGAGGTTCAGAGGTGAAGAAGACTGTGATATTAGGGGTGGTTCTAGCACGTTACGTGGCGCTGCCACTGGTGGGGATACTGGTGGTGAAAGGAG CATTGCGGTTTGGTTTCATCCCATCATCAGATCCACTCTATCAGTTCATTCTCCTTCTTCAGTTCACTGTTCCTCCTGCAATGAACATAGGAATAATCAC ACAGTTGTTTGGAGCAGGGGAGTCAGAGTGTTCTGTGATCATGCTGTGGACTTATGCATTAGCTTCTATCTCCCTTACTTTCTGGTCCACCTGCTTCATG TGGCTTGTTGCTGCTTCTTGA
AA sequence Show only first row Show all	>Lus10025166 pacid=23167768 polypeptide=Lus10025166 locus=Lus10025166.g ID=Lus10025166.BGIv1.0 annot-version=v1.0 MAVLDLFIASTIPVLKVLIVTALGTFLALDPVNVLGPDARKHVNNIVFYVFNPALMIANLSMTITFQQMVKLWFMPVNILITFVVGSVLGWVVLQLTRPP PKLRGLIVGCCAGGNLGNMFLVMIPAICKEKGSPFGAPDVCQSYGLAYVSVSMAMGAIYLWTYVYNIMQASTTASMAAVEDADKLPISVDTTTASSKDDS FEHPLLEATPKSTRDGCCLFPEKLKQGLSNTLGSVNWKTLFAPSTIGVIIGFTIGLTPPIKNMLVGDEAPLRVIQDCAALLGDAAIPTLTLLMGANLLRG LKGGSEVKKTVILGVVLARYVALPLVGILVVKGALRFGFIPSSDPLYQFILLLQFTVPPAMNIGIITQLFGAGESECSVIMLWTYALASISLTFWSTCFM WLVAAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	0	1
AT4G17370			Oxidoreductase family protein ...		Lus10007490 [exp]	4.2	0.7327
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10016598 [exp]	5.9	0.6869
					Lus10005748 [exp]	10.8	0.7134
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	11.5	0.7261
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	11.5	0.6883
AT2G22180			hydroxyproline-rich glycoprote...		Lus10016800 [exp]	14.1	0.6857
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003756 [exp]	14.8	0.6769
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10038016 [exp]	18.5	0.6568
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	20.9	0.7043
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	22.8	0.7040

Compare expression of checked genes

Lus10025166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.