Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20960 285 / 1e-87 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT2G42270 256 / 7e-78 U5 small nuclear ribonucleoprotein helicase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022081 [exp] 188 / 4e-57 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 0 / 1 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095500 [exp] 350 / 2e-110 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 332 / 2e-104 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025169 pacid=23167742 polypeptide=Lus10025169 locus=Lus10025169.g ID=Lus10025169.BGIv1.0 annot-version=v1.0 ATGTCTAATCTCGGTGGTGGTGCCGAGGCTCATGCTCGATTCAGGCAATACGAGTACAAAGCTAATTCTAGTCTGGTCCTCACAACAGACTCTCGTCCCC GAGATACTCATGAGCCGACTGGCGAGCCCGAGTCTCTCTGGGGCAGGATGGACCCCAAAAGCTTTGGCGACCGCGCTTTCATAGGCCGACCACCTGAGCT AGACGAGAAGATTCAGAAATCTAAGAAAAAGAAGGAGAGAGATAGGCTAGCTGAACCTGTTCCTAGCCGCCAAGCAAAACGTCGCCGCATCAGAGAAGAG AGTGTCCTCACCTCAACTGAGGAAGGTGTATACCAGCCAAAGACCAAGGAAACTAGAGCTGCATATGAAGCCATGCTTAGTGTTATTCAAAGACAACTGG GTGGTCAGCCTCTTAATATTGTCAGCGCTGCTGCTGATGAAATTTTGGCTGTCCTTAAGAACGAGTCTCTCAAGACCCCTGACAAGAAGAATGAAATTGA GAAGTTATTGAATCCAATTCCTGGAAGTGTGTTTGATGAGATGGTTTCCATTGGCCGTCTGATCACAGATTACCAAGATGCAGTTGATGTCGGGGGAGAT ACTGCAGCTAATGGCGATGAAGCTCTGGACGATGATGTTGGTGTGGCTGTTGAGTTTGAGTGGTGGCTGGTGAGTTTGACGAAGACAATGAGGACGAGGA TGACGAGAGTGATCTTGATGTGGTCCACGAAGATGAAGAGGATGATGATGAGGATATGGTTGAGCGAGATAGTGGTCACGGTATGCAGGTGGGTGGCATG A
AA sequence Show only first row Show all	>Lus10025169 pacid=23167742 polypeptide=Lus10025169 locus=Lus10025169.g ID=Lus10025169.BGIv1.0 annot-version=v1.0 MSNLGGGAEAHARFRQYEYKANSSLVLTTDSRPRDTHEPTGEPESLWGRMDPKSFGDRAFIGRPPELDEKIQKSKKKKERDRLAEPVPSRQAKRRRIREE SVLTSTEEGVYQPKTKETRAAYEAMLSVIQRQLGGQPLNIVSAAADEILAVLKNESLKTPDKKNEIEKLLNPIPGSVFDEMVSIGRLITDYQDAVDVGGD TAANGDEALDDDVGVAVEFEWWLVSLTKTMRTRMTRVILMWSTKMKRMMMRIWLSEIVVTVCRWVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	1.7	0.9801
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	2.0	0.9762
AT3G12440			Polynucleotidyl transferase, r...		Lus10000103 [exp]	2.4	0.9760
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	3.2	0.9748
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	3.5	0.9740
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	4.2	0.9703
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	4.5	0.9690
AT2G07820			unknown protein		Lus10015035 [exp]	5.7	0.9720
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	6.2	0.9633
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	6.3	0.9753

Compare expression of checked genes

Lus10025169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.