Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76630 1209 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G04240 53 / 1e-06 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G17970 44 / 0.0007 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003576 [exp] 57 / 8e-08 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 53 / 2e-06 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 53 / 2e-06 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G001700 [exp] 1406 / 0 AT1G76630 1375 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G051400 [exp] 52 / 3e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 50 / 2e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G046900 [exp] 46 / 0.0002 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 44 / 0.0005 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025170 pacid=23167889 polypeptide=Lus10025170 locus=Lus10025170.g ID=Lus10025170.BGIv1.0 annot-version=v1.0 ATGTCACCTAAGCTGCAAGACGAAGAAGTAGAAGAAGAAGTAGGAGGAAACGAAGAAGTTAACCAAGAAGAACCTGATCGGATAGGAACGGTGAAGAAAT TGGAGGATCTAGTTGCAGCTCACCCGGAAGATCCTTCTCTTCGTTTTCAACTCGGCCTCTTGTTGTGGGAGAATTCCGGTGCCTGCTCGAGATCAAGGGA GAAAGCAGCTGAGCATTTTGTTGTCTCAGCGAAATACAACCCTGGCCATGCTCCGACTTTCAGATATTTGGGGCACTTCTATTGCTCTGTCTCCCTTGAG CTTCAGAGAGCTCTCAAGTGTTACCGCAGGGCACTATCCATCGATCCTGATGACTCGGAATCTGGTGATGCACTCTGCGATATGCTAGACCGCTCTGGAA ATGAGACCTTGGAGCTGGCTGTGTCTAAGGAAGCTTGTGAGAGGTCTCCAAGGGCCTTCTGGGCTTTCCGCAGGCTGGGATTCTTGCATCTTCACCAGAG ACGATGGTCTGAGGCTGCCCAGTGCCTGCAGCACGCCATTCGTGGATATCCTGCTTCTGCTGATTTGTGGGAAGCTCTGGGTCTTGCCTACCAGCGGCTT GATATGTTTACTGCTGCTACCAAGTCATATGCCCGTGCCATTGAGTTGGAAGATGCAAGAGTCTTTGCACTGGTTGAAAGCGGAAATCTTTTCCTGATGC TTGGTTCATTCCGAAAGGCGATTGAAATATTTCGTCAAGCCCTCCAGGTTTCACCTGAAAACACTTCTGCAAACTACGGGCTTGCTTCTGGACTCTTAGG GTTATCAAAGGAGTGTATGAGTTTGGGTGCATTTAGATGGGGAGCTTCACTGTTGGAGGATGCATGTAAAATAGCAGGGGCAAGTGCTCACTTGGCTGGA AACATTTCATGCTTATGGAAGTTGCATGGTGACATACAGCTTACATACGCCAGATGTTTTCCATGGATGGAAGAGGACAAAATAATACAATTTGATGCAA AAGCTTGCAATGCATCCCTTCTTTCCTGGCATCAGACCTGCCTTTTGGCTGCCTCATCTTCCAGACTGTCATATTTAAAAGCTATTCACTTGTTCCCATG GCAAGCTAGCCTGTATGTGGACACTGCAGTAGCTTCAGATCTGATTTCCTCCATGGATGAGAAAGGCTGTCAGGATCCCTATGATTGGCAGTTACAAGAG AAGATGACTTTGGGGGCATTGCTACTTGAGGGTTGCAATTATGATTTCTGGGTGACACTTGGTTGTTTGTCTAGTCACACAGCATTGAAGCAACATGTTT TAATCCGGAGTTTGCAGTTGGATTTGTCCTTAGCTAGTGCATGGGCATACCTTGGCAAGTTATATAGAGAAGAGGGTGAGAAGAAGCTGGCAAGACAGGC CTTTGATTTTGCTCGGAGCATAGATCCATCTCTTGCTTTACCTTGGGCAGGCATGTCAGCTGATTGTGTGAAGGGTCTGAAATCAGCTGAAGAGTTTGAG AGTTGTTTACGAGCTGTGCAAATACTGCCTCTTGCAGAGTTCCAAATGGGTCTTTCTCATCTTGCTTTGCTTACAGGCCACCTTGCTTCTTCTCAGGTTT ATGCAGCCATCCAGCAGGCAGTACAGCGCTCACCCCAATATCCAGAATCTCATAATTTGAATGGCTTAGCTTGTGAGGCGCGGCATGAGTACGGGGCTGC TGTTACTTCTTATAGGATAGCTCGCTGTGCTATCAAGAACTCTCATTCGAAGTCTATGAAATCTCAGTTCATTGATATAACAACTAATTTGGCACGAGCT CTTGTTAAGTTGGGGTTTTCTTTGGATGCTGTTCATGAATGTGAACTTTTGAATAATGAAGGTATGCTTGATACTAAAGGCATGCAGATATACGCTGTTG CTCTATGGCAACATGGGAAGTATGACCGTGCCCTTGGTGTAGCAAGAACTCTTGCTGATACTCTTTCCACAGTGGGAAAAGCATCCGTCTCTTCTATTGT TAGTTTCATCAGTCGGCTGCTTTATTGGATTTCTGGAATAGATTCAGCAATCACAAGTCTGGTGAAAATGCCAAAAGACGCCTTTGAGAGCACAAAAGTG CGGTTTATAGCACATGCTTTCTACGCTCTTGATCAAAGTAAGAGGCTTAAGTCAAAAGTTTCAGACATGCATTCCTTCCTTTTATCTGACGAGGAGGCTG TCGAAGTAAACTATTTGATGGGACTTACTGAATTGGTCAAACATGGATTTACGAACCCCCTTTCCTTTGGATGTGGTGTTACGCAGCTAAAAAGAGCTCT TCATCTTTACCCTAACAGCAACTTGATCAGAAATCTACTTGGGCATCTATTGCTATCTACTCGAGAATGGGATGACTCTCACATAGCAAGTAGATGCTGC ATAGTCCGTGGTCCTTTTGGACCAAGCAGGGAAGGTTTAAAATCTGGATATGAAATACTTGGCGCTGCAACAGTTTCTTGCTATGCTGTTGGAAATGAGG ACGAGAAGTTATGTCTCCCCACATGTGATTATCTGTGCCGTGAAACTCCCAGAACCATCCACGAATTGCAGAAATATATACACCAACAGCCGTGGAATGA TGCTGCCAGATACTTGGTTATCCTTAACCTTTTTCAGAAGGCATGTGAAGAGCAATTCCCTTCACTAACTTGCATCACACTTAAGAGGCTACTATCTGCT GCTCTATCCAAGGAAAATACTTCTAGTAATTGCATGTTTAATCACTATAAGAAGTTTCAGCTTCTGCTTTGTGCTTCTGAAATAAGCTTGCAGTGCAATG CACTTGCTGATGCTGAGGATTATGCCAGAGATGCATCTTCACTATCTGTCCCTTATAAGTACCTTTTTTTCAGTAACTTACTATTGTCTCGCATTTATGC TGCAAAAGGTGATCATGTAAATCTAAGGCAAGAGTATGTACGTTGTCTGGAGCTGAAGACAGATTATCACATAGGATGGATATGTCTCAGAATATTGGAA TGTCAATATGCCTTGCAAACTGATTCAAGCTCAGTGGAGTTGACCTTTAGGGAATGCTCAACTGGTTGGAAGAATTCATGGAAGGCCCTACTTAACTTGG TTCTCGGTTTAGCATATCTATTGAAAGACGATCTTTTTTCAGCTGAAGATCATCTTGCTCAAGCTTGCAGGACGATGGATGCTGATAGCTGTTTCCTTCT TTGTCACGGTGCCGTCAGTTTGGAGCTTGCCAGACGATTCTCTAGCTCCCAGTTTTTATTGCTAGCTGAAAGGAGTCTTGCTAAAGCTACTACATGTGCT ATTCCCTTGCCTATTGCATCTTTACTTGTCGCTCAGGTTCAAGGGAGCCTTGGTCACAGAGAAATGTGGCAGAAGCACCTACGTCTTGAGTGGTATTCTT GGCCACCAGAGATGAGACCGGCAGAGCTTTTCTTTCAAATGCATCTACTTGCCAATGAACCGAGAGCTACATTGACAAAGCCTTCATCGAGCATCGAGTT GTGTCAAAGCCCAGAGCAATGGGTTCTCAGGGCAATTCATACAAATCCTTCTTGTTCAAGGTATTGGAGGGTATTGCAGGAGATGGTTAAATGA
AA sequence Show only first row Show all	>Lus10025170 pacid=23167889 polypeptide=Lus10025170 locus=Lus10025170.g ID=Lus10025170.BGIv1.0 annot-version=v1.0 MSPKLQDEEVEEEVGGNEEVNQEEPDRIGTVKKLEDLVAAHPEDPSLRFQLGLLLWENSGACSRSREKAAEHFVVSAKYNPGHAPTFRYLGHFYCSVSLE LQRALKCYRRALSIDPDDSESGDALCDMLDRSGNETLELAVSKEACERSPRAFWAFRRLGFLHLHQRRWSEAAQCLQHAIRGYPASADLWEALGLAYQRL DMFTAATKSYARAIELEDARVFALVESGNLFLMLGSFRKAIEIFRQALQVSPENTSANYGLASGLLGLSKECMSLGAFRWGASLLEDACKIAGASAHLAG NISCLWKLHGDIQLTYARCFPWMEEDKIIQFDAKACNASLLSWHQTCLLAASSSRLSYLKAIHLFPWQASLYVDTAVASDLISSMDEKGCQDPYDWQLQE KMTLGALLLEGCNYDFWVTLGCLSSHTALKQHVLIRSLQLDLSLASAWAYLGKLYREEGEKKLARQAFDFARSIDPSLALPWAGMSADCVKGLKSAEEFE SCLRAVQILPLAEFQMGLSHLALLTGHLASSQVYAAIQQAVQRSPQYPESHNLNGLACEARHEYGAAVTSYRIARCAIKNSHSKSMKSQFIDITTNLARA LVKLGFSLDAVHECELLNNEGMLDTKGMQIYAVALWQHGKYDRALGVARTLADTLSTVGKASVSSIVSFISRLLYWISGIDSAITSLVKMPKDAFESTKV RFIAHAFYALDQSKRLKSKVSDMHSFLLSDEEAVEVNYLMGLTELVKHGFTNPLSFGCGVTQLKRALHLYPNSNLIRNLLGHLLLSTREWDDSHIASRCC IVRGPFGPSREGLKSGYEILGAATVSCYAVGNEDEKLCLPTCDYLCRETPRTIHELQKYIHQQPWNDAARYLVILNLFQKACEEQFPSLTCITLKRLLSA ALSKENTSSNCMFNHYKKFQLLLCASEISLQCNALADAEDYARDASSLSVPYKYLFFSNLLLSRIYAAKGDHVNLRQEYVRCLELKTDYHIGWICLRILE CQYALQTDSSSVELTFRECSTGWKNSWKALLNLVLGLAYLLKDDLFSAEDHLAQACRTMDADSCFLLCHGAVSLELARRFSSSQFLLLAERSLAKATTCA IPLPIASLLVAQVQGSLGHREMWQKHLRLEWYSWPPEMRPAELFFQMHLLANEPRATLTKPSSSIELCQSPEQWVLRAIHTNPSCSRYWRVLQEMVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	1.4	0.8605
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	1.7	0.8373
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	2.0	0.8271
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	2.4	0.8511
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	2.8	0.8209
AT2G39580			unknown protein		Lus10029459 [exp]	3.0	0.8188
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	7.7	0.8004
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	7.7	0.7961
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	8.2	0.7947
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	8.7	0.7912

Compare expression of checked genes

Lus10025170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.