Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76660 362 / 4e-119 unknown protein AT1G21065 112 / 3e-28 unknown protein AT5G52430 103 / 2e-23 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 84 / 3e-17 unknown protein AT4G25620 57 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016050 [exp] 749 / 0 AT1G76660 438 / 5e-152 unknown protein Lus10032276 [exp] 118 / 4e-28 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 118 / 5e-28 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10039253 [exp] 115 / 8e-27 AT5G52430 374 / 6e-125 hydroxyproline-rich glycoprotein family protein (.1) Lus10027498 [exp] 112 / 1e-25 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 89 / 4e-18 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 88 / 7e-18 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10016049 [exp] 0 / 1 AT1G21065 219 / 2e-72 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G001100 [exp] 459 / 5e-156 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 437 / 4e-148 AT1G76660 453 / 7e-158 unknown protein Potri.001G102200 [exp] 120 / 1e-28 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001500 [exp] 112 / 3e-28 AT1G21065 265 / 5e-91 unknown protein Potri.012G144200 [exp] 112 / 6e-26 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 108 / 8e-25 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01894 [flax] [poplar] UPF0047 Uncharacterised protein family UPF0047
Representative CDS sequence Show only first row Show all	>Lus10025171 pacid=23167867 polypeptide=Lus10025171 locus=Lus10025171.g ID=Lus10025171.BGIv1.0 annot-version=v1.0 ATGGATGGTGTATTTGTGTTTGTTATATTGATGCTTGCTTCTGAAGTGGGGGAGCGAAAGAGATGGGGAGGGTGCTTAGGAGCACTTTCTTGTTTCGGCG CACAGAAAGGTGGGAAACGTATCGTCCCTGCATCTCGAACTATTGATGGAAATGCTTCAGCTGCACAGGCAAACGGACCTCAAGCAGCTGGGATGACCAA CCAAGCTACAACACTAGCTCCTTCTCTTCTTGCTCCACCTTCTTCACCAGCTTCGTTTTCAAACTCCGCTCTCCCTTCTACTGCTCAGTCTCCCAGCTGC TTCCTCTCAGTGTCTGCCAACTCACCCGGCGGCCCTTCCTCAAGAATGTTCGCTACCGGGCCTTATGCCCATGAAACACAACTGGTTTCACCCCCAGTTT TCTCAACATTTACAACCGAGCCGTCCACTGCCCCTCTTACTCCTCCCCCTGAGTTGGCTCACTTAACTACACCTTCCTCCCCTGACGTACCTTTTGCTCA ATTTCTCAAGTCCTCTGCACGTCTCAAAAGCTCCGAAAAGGGTAGTTATATCGCCGGGAATGATAGTTTGTCCTCATCGTTCCCCGAACGGGAGTTCCCT CCTCAGTGGGATCCTTCTGTTTCCCCTCGAAATGGAAACTGCTCCAGGACTGATTCCGGCAGGCTTTATGAGCATGATGCTAATTCTTCTCCCTCCATGG CAACCCGGGATTCAAACTTCTTCTGTCCTGCCACATTTGCACGGTTCTACCTGGACCATAATCCGCCGTTTCCTCACACTGCTGGGAGGTTGAGTGTCTC TAAAGATTCGGACGTCTATCCTGCCGCTGGGAACGGGCATCAGAACAGAAACAACAAGAGTCCCAAGCAAGATGTTGAAGAAATAGAAGCTTACAGAGCA TCGTTTGGGTTCAGTGCTGATGAAATTATAACTACTACCCAGTACGTGGAGATATCTGATGTTCATGATGACTCCTTTGTAATTACTCCGCTTGCTTCAA GCACCGATGACACGGGATATCGCCCAGAAGCTGAGTCAGAGAGCGAAAACCAAAGATTATTGGGAAAGCAACGGAACTCGTCGGGACATGAGTATCCGAA GTTGAAATCCGATGTACATACTGGGGAAGGCTGTGAAGCCTTTGTCCCTTCCGATAGATACAAAGGGAGGAAGGCAGGAAATAGCCCCGGTACAAGAACA CCTCCCAGCGACGACGAGATATTCTCTCAATCGAAAGGCAGCAGGAAATATATTAAGGGTCAGTCGGTCTCAGACGCTGAAATTGACTATAGGAGGCGGT GGACAGATCGTGGGCTAGGAAAGCCCAGAGGAGTAAAGCAGAACCACCTGAACCATGCAATCAGCTATCTCCGCCGCCGTTGTCCAATCCACCATTCCAA CCGCCGCCGCCTCCTCCGCTCCCTTGAGATTCTCTTCTGCTTCCAGGCCCAATTCCGTCAGCTCGCCCTTGGCTCTCCGTCCTCGCCGGTCAGCACTACA AGTGAATTCACTGTACTCATCCACATATTCGTCCTTGCACAGCAAACTTCAAAGCTCCTCCATGGCTTCCCCTGCGACGATCCCCAAATGGGCCCAGAAG ACCGTCACCCTTCCTCCACTGCGTCGCGGCTGTCATCTCGTCACCTCAAAGCTTCTCGAAGGCTCCGAATCATGTTCATAACCGTTGGAAATGGAAATCG TCTCATTTCAGTGCAGCATACGAGTGCTTCCCTTACTATCAATGAGAACTGCGATTCTGACGTTAGGGCCGACATCGAAACTTTCCTCAACGCAGTAGTC CCTGAGGGTAATTCCGCGCCATGGAAACATACCCTGGAAGGTGCAGATGACATGCCAGCACACGTTAAATCATCGATGTTTGGCTGCACTCTGACGTGTG ATTCCAATTACCAACGGAAAGCTCAATATGGGCACTTGGCAGGTCTGTTGCCGACACTCAAATGTCACCCTTGTCACGATTAA
AA sequence Show only first row Show all	>Lus10025171 pacid=23167867 polypeptide=Lus10025171 locus=Lus10025171.g ID=Lus10025171.BGIv1.0 annot-version=v1.0 MDGVFVFVILMLASEVGERKRWGGCLGALSCFGAQKGGKRIVPASRTIDGNASAAQANGPQAAGMTNQATTLAPSLLAPPSSPASFSNSALPSTAQSPSC FLSVSANSPGGPSSRMFATGPYAHETQLVSPPVFSTFTTEPSTAPLTPPPELAHLTTPSSPDVPFAQFLKSSARLKSSEKGSYIAGNDSLSSSFPEREFP PQWDPSVSPRNGNCSRTDSGRLYEHDANSSPSMATRDSNFFCPATFARFYLDHNPPFPHTAGRLSVSKDSDVYPAAGNGHQNRNNKSPKQDVEEIEAYRA SFGFSADEIITTTQYVEISDVHDDSFVITPLASSTDDTGYRPEAESESENQRLLGKQRNSSGHEYPKLKSDVHTGEGCEAFVPSDRYKGRKAGNSPGTRT PPSDDEIFSQSKGSRKYIKGQSVSDAEIDYRRRWTDRGLGKPRGVKQNHLNHAISYLRRRCPIHHSNRRRLLRSLEILFCFQAQFRQLALGSPSSPVSTT SEFTVLIHIFVLAQQTSKLLHGFPCDDPQMGPEDRHPSSTASRLSSRHLKASRRLRIMFITVGNGNRLISVQHTSASLTINENCDSDVRADIETFLNAVV PEGNSAPWKHTLEGADDMPAHVKSSMFGCTLTCDSNYQRKAQYGHLAGLLPTLKCHPCHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76660			unknown protein		Lus10025171 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	1.4	0.9163
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	2.4	0.8937
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10022599 [exp]	2.4	0.9055
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	4.2	0.8738
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	5.7	0.8651
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	5.9	0.8689
AT5G38060			unknown protein		Lus10004070 [exp]	6.3	0.8643
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	6.3	0.8747
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	6.7	0.8649
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	8.1	0.8642

Compare expression of checked genes

Lus10025171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.