Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19850 508 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1) AT5G42400 362 / 4e-103 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G36530 174 / 9e-48 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 160 / 2e-42 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G31650 149 / 7e-36 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 149 / 8e-36 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G27910 125 / 2e-28 SDG16, ATX4 SET domain protein 16 (.1) AT4G25290 120 / 2e-27 DNA photolyases;DNA photolyases (.1) AT5G13800 116 / 7e-27 CRN1, PPH Co-regulated with NYE1, pheophytinase (.1.2) AT5G53430 119 / 1e-26 SET29, ATX5, SDG29 SET domain group 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016051 [exp] 2117 / 0 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10028315 [exp] 177 / 3e-48 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003969 [exp] 166 / 2e-44 AT5G38520 426 / 2e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041763 [exp] 160 / 2e-42 AT4G36530 484 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10026725 [exp] 152 / 7e-37 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 152 / 9e-37 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10012626 [exp] 131 / 2e-30 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10031137 [exp] 129 / 4e-30 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10010121 [exp] 130 / 6e-30 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G260100 [exp] 837 / 0 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 811 / 0 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.003G219700 [exp] 523 / 2e-172 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 170 / 8e-46 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 166 / 3e-44 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G232800 [exp] 152 / 7e-37 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 151 / 1e-36 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.015G129500 [exp] 127 / 1e-29 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.009G054800 [exp] 124 / 7e-29 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2) Potri.012G013900 [exp] 122 / 1e-27 AT5G53430 1423 / 0.0 SET domain group 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold CL0028 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10025172 pacid=23167832 polypeptide=Lus10025172 locus=Lus10025172.g ID=Lus10025172.BGIv1.0 annot-version=v1.0 ATGGATCACGAATTGAATGGACTCGCCAGCGATGTTCCTGAGGCTTCAGATAATGCTGGGGCCAGTAGTTCTCTCTATCATCTGCCTGTATTAGTGAATG GATGGATGTATGTTAATGAGCATGGCCAAATGTGTGGTCCTTATATTGATTCTCAGCTGCACGAAGGTTTCTTATCTGGTTTTCTGCCTGGGGAACTTCA AGTGTTTCCTGTAGTAAACCAAAGTATAGCAAATCCTGTTCCTTTGAAGTACTTCCAACAGTTTCCGGATCATGTCAAATCAGGCTTTATGTACCTCAGT TCTCCCAACTCCGAAACACTTTTGTCAATGCCTGATTCCAGCTTGACACCTCATCAACCAGGAGTGAATGTTCAGAGTGCATCTTTGGTTTCTAATTCAC AACACCCTTACTCTTCTGCCTTTGGCCAGCAAATGCTTGTTTCTGGAGAGGCTATTCAAGTAGAATTGTCAGATGATGATTCTTGTTGGTTATTTGAGGA CGAGGAGGGAAAGAAACACGGGCCTTATAGTCTTATGGAGCTTTATTCTTGGCTTTGCTATGGATATCTTCGGGATACATCAACGATGCATCATATGCAG AAAGATTACGGGCCCATCCTGTTGCTGTCTCTTGTGAATGAATGGAGAGCATCAAAGGTCAAATTAACATCTGTAGCACATGCGACATGCAAAATTACTT CTTCAAAGGGCTTAACATCAGTAGTATCTGAAGAAATTTCCCTTGAGTTGCACTCTTTGATTGTGAAAGCAGCTCGGAGAGTGGTGCTACATGAAATTAT TAGCAATGTTATCTCAGCAGAAAGACATCCAAAGCTAGATAATCGAACTGCTAAAACTCGCTTACCTGAAGGTGAAATGTCTGGATTTGCTGGTGAAAAG GTAAAACATGCAGTTTCTGGGTTTGATATTGGGGCTTGCAGCGATGTAGCATCAGGAGCTCATTCTGCTTCAATGCAGTTTCCTGGCAACAAAAAATCTA TTGGCGACGTTGATAGCTTCTGGGTTTCTAATGAAGTTATTTGTAGATCTCTTTTCAGCTATTGCATGGCAGATCTTTGGAATGCTGTTTTTCACGATCC AGTAGTCGATTATTCAACTTCCTGGAGGAAAAGGAAAATTTGGTTTGACCCTCCCCAGATTGGATCTCCTGATCGTGGGAAATCTGAAAATAAGTTTCAA GCTTCTACAACCCATCTCGTATCCCCTGAGGAGTCCATTGGTTGTAATGGCGACTCCACCCCTGGGTTTGAGCTTGGCAGAACTGAAACAGATAATCAAG TAGGATCAGCTGTAACAACTTTGCTCATTCTTAAGCCATTAGAAGAGACTATCCCATTATGCAAGGACTGCGACCATGATGACATGAATAGTGTTGTGGA GAGTATAGGAAGTGAACTTCATGAGTCTGCTAAGGCTTGCTTGACTGAGTTTGCTGCAATTCTTATCAAAGAGGAAGTCATGAGGGTAGCTGATATTGGA GAGGAGGACAACACTTCTGATATCAGTGGTTGTCACACATTCTCTACCTCAGTAGTGCCTGAAGAACAGAGTGAGTCCATTGGGATTGCCCTCGACAATC TTACAAGTTCATCGCTTGCCATTGCTAACCAGCTTGCTGTGAAAACCAAATCCAGTTTCCTTGCAAGTGCTTTTGGGAAGATACACTTAAGTAGTGATGT TCTCCCTGATGTGGATATTGCTTGCCAACTGTCACCACCTGGATCTAACGATGGTGTTACCACTCTCCTACCACCCTCACGTGAAGTCCATTTACCAGCA TCCAATGAGCATCATTCTAGGATTAAGCAATACATTGCCTTAGCATTATGCAGGCAGAAGTTGCATGATAGTTCTGTGGGTGAGTGGAAAGCTTGGGTAT TTTCCAATCTTCTGAAGCAGGGTCTTCGATCATCTCCAGTTTTGGGGAAACAGTGTAAATTTGACAATGAAAAGGATGAAGTGGACAGGCAAAGGCAGCA ATCACTGAAGATGGGGATGTCAGATCCGATGGGACGTTGCCCACTTACTGGTAACTACACATACTTTCGAAAGAAGAAATCGGCCCGGACAAAGTTAGCA TCGTCTTCACTGTTGGTGCCTCCTGTTGCTTCCGAATCGCACAACCAGCTGATAGAATCATCTAGAAAGTACGTTTTGGTCCAGGACTCTGCTAAGGATG CAGAAGCTGAAATGGGTGTTACCAACCTCACTAAACGCCAGAAGCTGTCTCTTAGTTCTAACTTGAAAATCATTGGAAAAAGTGGTCAGCCATCTCAACA TTCAATGACTAAGAGGGCCAGTCAAAGCAGAATGAAGAAAGTCGTAAAGGACATTCCATGTGACGAGGTCGCATATAATGCTGTAAACCCCCCGAGGAGT ATTGGAGACGGCAATGATGATGAGGAGGCCATCAATGATAGTACCTGTACTGTTGGAGTCAAGGTCTCACCTACACTTGACAGTCTTAAGAAGAAACGGA CTTCTACTACTAAACAATCGGAGCTGAAAACGAAGCATTTGTCAGATGTTGGTGGATCACCGTTGCATCCAAATAAGGTCTTAAAACTAGAAAACGTCAG TGACAAGCAAGTTATTAGACGCATTGCATTGAAGAACAAAAAGTCCAGTAAGGCCCGGTTGTCTAAAACCTGTCCAAGTTCAGAAGGCTGTGCACGCACT TCAATTAATGGATGGGAATGGCACTTATGGTCACTGAATGCAAGCCCGCCTGAAAGAGCTCGTGTTAGGGGACAGTTCTTTTATTCCAAATGTTCAAGTT CTGAGATTTCTACATCACTGTTCACAAGTAGAGGTCTTTCTGCAAGAACAAATAGAGCAAAGGTCCGGAATCTTCTTGCTGCTGCTGAAGGTGCTGACCT TTTGAAAGCCACACAGTTGAAGGCAAGGAAAAAACGATTGCGTTTTCAACGAAGTAAGATACATGATTGGGGTCTTGTTGCACTGGAACCAATTGAGGCG GAGGATTTTGTGATTGAATATGTTGGTGAACTGATTCGTCCTCGAATATCTGATATACGTGAAGTACTGTATGAGAAGATGGGAATTGGCAGCAGCTATC TCTTTAGGCTTGATGATGGATATGTGGTAGATGCTACTAAGCGTGGTGGGATTGCAAGATTTATAAATCATTCTTGCGAGCCCAACTGTTACACCAAGGT TATAAGTGTTGAAGGCCAGAAGAAAATATTTATATATGCAAAGCGCCATATAAAGGCCGGTGAAGAAATTACTTATAATTATAAATTCCCTTTAGAGGAG GAAAAAATCCCTTGCAACTGTGGTTCTCGGAAGTTATTGAAACAATGGCATCACAGGATGGTGGACAACGTTGGTCACGGTGATCTTTTGTTGAGTTCTT TATCCTACTTTTTTGGAGATACGTTGCTGATTAATGTGCATATTCTTGTGGATCTCAGTCCGTTGAAAAATGCTTGGATGACAATGGCGATCACCACTTC TCCGACGTTTCCCTTACATAAACTCCGCTTTCCCTTTCGTGCGCATGTTTATGCTTCTTCCGAAACAAGCAACTGGATGCCAAAACCGCCCCCATCTCTC CTCCCTGTTACCGGTTATTTCAAATCCAGCAACCACAGTGCTAACGTCGCCTCTCCTTCAGCTCCATTGATCTCACCATCTATCCGATCAACCTGCTTCC CTGTTTGTTGCTCTTCCTTCAGCGATCTCGTTCAGAGCACCTCGCTGCCACTCGACGCTGGTGACAGCAGCAGTGGCCCTGTCGTAGAAACCAGTATCTG GAACTGGAAGGGTTATTCTATCCGCTATCAGTGTGCTGGGAAAACTGGCCCTGCTCTCGTTCTCGTTCATGGTTTCGGAGCTAACAGTGACCACTGGAGG AAAAATATCCCAGTTCTTGCAAAAACACATAGAGTATATGCAATTGATCTTATTGGCTATGGATTCTCAGATAAGCCAAATCCCCGTGGATTCGGGGATG TCTCATTTTACACATTTCAGACCTGGGCTACCCAAGTAAATGACTTCTGCATTGAAGTAGTAAATGACGAAGCATTCTTTATATGCAATTCCATAGGAGG ACTTGTTGGACTTCAGGCAGCAGTTATGGAGCCTCTGAGATGTAAGGGAATTGTCTTGTTGAACATATCCTTGCGGATGCTTCATATCAAGAAACAACCA TGGTTTGGAAGACCATTCATCAGATCCTTTCAGAACATACTTAGGAATACTGAATTGGGCAAGTTTTTTTTCACCGCAGTGGCAAAACCCGAATCCGTGA AAAATATTTTGCGTCAGTGTTACCACGATACCTCCCAGGTGACGGATGAACTCGTCGAGAAGATCCTTCAACCAGGGCTAGAGCCTGGTGCTGCGGATGT ATTCCTCGAGTTCATTTGTTACTCAGACGGCCCTCTTCCCGAAGAGCTACTGCCTCAAGTGAAGTGTCCTGTCCTAATAGGATGGGGCGACAAGGATCCA TGGGAACCGATCGAACAGGGAAGAGCATATGGGAATTTCGATACGGTGGAGGAGTTTGTCGTTCTTCCTGATGTTGGTCACTGCCCTCAGGATGAAGCGC CTCATCTCGTGAATCCACTGGTGGAGTCGTTTGTGGCGCGCCACTCTACCTCCGGTTAG
AA sequence Show only first row Show all	>Lus10025172 pacid=23167832 polypeptide=Lus10025172 locus=Lus10025172.g ID=Lus10025172.BGIv1.0 annot-version=v1.0 MDHELNGLASDVPEASDNAGASSSLYHLPVLVNGWMYVNEHGQMCGPYIDSQLHEGFLSGFLPGELQVFPVVNQSIANPVPLKYFQQFPDHVKSGFMYLS SPNSETLLSMPDSSLTPHQPGVNVQSASLVSNSQHPYSSAFGQQMLVSGEAIQVELSDDDSCWLFEDEEGKKHGPYSLMELYSWLCYGYLRDTSTMHHMQ KDYGPILLLSLVNEWRASKVKLTSVAHATCKITSSKGLTSVVSEEISLELHSLIVKAARRVVLHEIISNVISAERHPKLDNRTAKTRLPEGEMSGFAGEK VKHAVSGFDIGACSDVASGAHSASMQFPGNKKSIGDVDSFWVSNEVICRSLFSYCMADLWNAVFHDPVVDYSTSWRKRKIWFDPPQIGSPDRGKSENKFQ ASTTHLVSPEESIGCNGDSTPGFELGRTETDNQVGSAVTTLLILKPLEETIPLCKDCDHDDMNSVVESIGSELHESAKACLTEFAAILIKEEVMRVADIG EEDNTSDISGCHTFSTSVVPEEQSESIGIALDNLTSSSLAIANQLAVKTKSSFLASAFGKIHLSSDVLPDVDIACQLSPPGSNDGVTTLLPPSREVHLPA SNEHHSRIKQYIALALCRQKLHDSSVGEWKAWVFSNLLKQGLRSSPVLGKQCKFDNEKDEVDRQRQQSLKMGMSDPMGRCPLTGNYTYFRKKKSARTKLA SSSLLVPPVASESHNQLIESSRKYVLVQDSAKDAEAEMGVTNLTKRQKLSLSSNLKIIGKSGQPSQHSMTKRASQSRMKKVVKDIPCDEVAYNAVNPPRS IGDGNDDEEAINDSTCTVGVKVSPTLDSLKKKRTSTTKQSELKTKHLSDVGGSPLHPNKVLKLENVSDKQVIRRIALKNKKSSKARLSKTCPSSEGCART SINGWEWHLWSLNASPPERARVRGQFFYSKCSSSEISTSLFTSRGLSARTNRAKVRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGLVALEPIEA EDFVIEYVGELIRPRISDIREVLYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEE EKIPCNCGSRKLLKQWHHRMVDNVGHGDLLLSSLSYFFGDTLLINVHILVDLSPLKNAWMTMAITTSPTFPLHKLRFPFRAHVYASSETSNWMPKPPPSL LPVTGYFKSSNHSANVASPSAPLISPSIRSTCFPVCCSSFSDLVQSTSLPLDAGDSSSGPVVETSIWNWKGYSIRYQCAGKTGPALVLVHGFGANSDHWR KNIPVLAKTHRVYAIDLIGYGFSDKPNPRGFGDVSFYTFQTWATQVNDFCIEVVNDEAFFICNSIGGLVGLQAAVMEPLRCKGIVLLNISLRMLHIKKQP WFGRPFIRSFQNILRNTELGKFFFTAVAKPESVKNILRQCYHDTSQVTDELVEKILQPGLEPGAADVFLEFICYSDGPLPEELLPQVKCPVLIGWGDKDP WEPIEQGRAYGNFDTVEEFVVLPDVGHCPQDEAPHLVNPLVESFVARHSTSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	1.0	0.8612
AT4G31390			Protein kinase superfamily pro...		Lus10026952 [exp]	4.5	0.7787
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	5.7	0.7815
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	6.3	0.8293
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	6.3	0.8578
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	14.1	0.8053
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	14.3	0.7264
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	15.4	0.8353
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	21.0	0.7173
AT2G39580			unknown protein		Lus10029459 [exp]	24.8	0.7247

Compare expression of checked genes

Lus10025172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.