Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13600 576 / 0 calmodulin-binding family protein (.1) AT3G58480 506 / 8e-175 calmodulin-binding family protein (.1) AT2G26190 413 / 3e-139 calmodulin-binding family protein (.1) AT4G33050 405 / 8e-137 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT3G52870 399 / 1e-134 IQ calmodulin-binding motif family protein (.1) AT5G57010 385 / 1e-128 calmodulin-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016052 [exp] 1031 / 0 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 757 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 740 / 0 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 426 / 3e-145 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10016219 [exp] 427 / 1e-143 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 422 / 2e-143 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10035595 [exp] 421 / 9e-143 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10014872 [exp] 394 / 2e-131 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10029323 [exp] 77 / 6e-17 AT3G58480 84 / 6e-20 calmodulin-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218800 [exp] 684 / 0 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 674 / 0 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 547 / 0 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 521 / 0 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.018G061901 [exp] 503 / 4e-174 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 488 / 1e-168 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 451 / 7e-154 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 434 / 9e-150 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 418 / 7e-142 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.006G226500 [exp] 384 / 3e-130 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025173 pacid=23167740 polypeptide=Lus10025173 locus=Lus10025173.g ID=Lus10025173.BGIv1.0 annot-version=v1.0 ATGGGAGTTTCCTTTTCCTGCCCTTTCAGTAGTGATTCCAACGAAATCGAAAATGTGCTGGAACAATCGGTACTCGTCAAATCCATCAGCTTCGGACGCG ATGCCGGAGCCAACACTCCCGTCCGTTCCGTGAGTTTCGGGAGGTCAGATTTGGAGCCAACTATCTCCTCGTTTTCACCTTCCGGTGAAATGGTGGTCGA GAGATCCGTCAGCTTGAAAGGAGTCGAATTAGAGAAGATGATTAAAACGACGTCGTTCGCAAATGGAGATAAACAAGATGATTCATCATCATTTGCAAAC AAGGGCGGCGGCAACCCGAAGCAGGACGAGGCTGCTGTGAAATTGCAGAAGGTTTACAAGAGCTTCAGGACCAGGAGGAAGCTTGCTGATTGTGCTGTTC TTGTTGAGCAGAGCTGGTGGAAGCTATTGGATTTTGCGGAGCTAAAGCGCAGTTCCGTCTCGTTCTTCGACATCGAGAAGCATGAGACTGCAATTTCACG GTGGTCGAGAGCTAGAACTAGAGCTGCTAAGGTTGGTAAAGGGCTGTTGAAGAACGACAAAGCTAGGAAGCTGGCTCTCCAGCATTGGCTTGAAGCGATT GATCCAAGGCATCGATATGGTCATAACCTTCACTTCTATTATGATAATTGGCTTCATTCCAAGAGCAGACAGCCTTTCTTTTACTGGTTGGACATAGGTG AAGGAAAGGAAGTGAACCTCATTGATGAATGCCCAAGGTCCAAACTTCAACAGCAGTGCATCAAGTATCTTGGTCCGATGGAAAGGACGGCATATGAAGT TGTGGTGGGGGATGGGAAGTTGATCTACAAGCAAAGTGGGGAGCTTCTCAACACAAGTGGAGATTGCAAATGGATATTTGTACTCAGCACATCCAAGTCA CTGTACGTGGGGCAGAAGAAGAAAGGCACATTTCAGCACTCTAGCTTCTTGGCTGGAGGAGTCGCAACTGCTGCTGGTAGGTTGATTTCAGATGATGGGA TTCTGAAAGCAGTTTGGCCTCACAGTGGCCATTATCGCCCTACTGAAGATAACTTCAGGGACTTCCTCTCCTTCCTCACCGAAAATCATGTCGATATCAC TCATGTTAAGACTACTCCTGTGGAGGAAGAAGGCTCACTTGCTAAACAGAGAAGCAGCGAACATCTTCGAACTAGCTCTGAGGAAGACGATAACTCGATC GAAACAGTAGACAAGCCACAGGGAGGTTGCATCTCAACCGGGAAGTTGACCAATCTCGAAATTCCGAAGAGGGTCGATTTGTTTGATTGGAATAGTGTTT CCAATGCCGTGGAAGATGACTATGAAGAAATGGAGAATATTCCTGAACAAGCAATCTTGGAAAGGATCAACTCAAAGAAAGGAACAGAATCATCCTATCA ACTCGGAAGGCAGCTGTCCAGTAAATGGACAACCGGAGCTGGACCTCGAATCGGGTGCGTAAGGGACTACCCTTCGGAGCTCCAGTTCCGAGCCTTGGAG CAAGTCAACTTGTCTCCACGAATCAATCCTTCAAGCCGGGGATTAATGTCCTCGCCAGTTCGGTCCAATCGCAGCTTACCCTTCTACAGAGCACAAATCT CGTCCCCATTGTCGATCTCCAAGACCCTGGAGCTAGAATCTTAA
AA sequence Show only first row Show all	>Lus10025173 pacid=23167740 polypeptide=Lus10025173 locus=Lus10025173.g ID=Lus10025173.BGIv1.0 annot-version=v1.0 MGVSFSCPFSSDSNEIENVLEQSVLVKSISFGRDAGANTPVRSVSFGRSDLEPTISSFSPSGEMVVERSVSLKGVELEKMIKTTSFANGDKQDDSSSFAN KGGGNPKQDEAAVKLQKVYKSFRTRRKLADCAVLVEQSWWKLLDFAELKRSSVSFFDIEKHETAISRWSRARTRAAKVGKGLLKNDKARKLALQHWLEAI DPRHRYGHNLHFYYDNWLHSKSRQPFFYWLDIGEGKEVNLIDECPRSKLQQQCIKYLGPMERTAYEVVVGDGKLIYKQSGELLNTSGDCKWIFVLSTSKS LYVGQKKKGTFQHSSFLAGGVATAAGRLISDDGILKAVWPHSGHYRPTEDNFRDFLSFLTENHVDITHVKTTPVEEEGSLAKQRSSEHLRTSSEEDDNSI ETVDKPQGGCISTGKLTNLEIPKRVDLFDWNSVSNAVEDDYEEMENIPEQAILERINSKKGTESSYQLGRQLSSKWTTGAGPRIGCVRDYPSELQFRALE QVNLSPRINPSSRGLMSSPVRSNRSLPFYRAQISSPLSISKTLELES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	0	1
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	1.7	0.7972
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	2.2	0.7468
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	16.7	0.7327
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	17.5	0.7252
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	17.8	0.7754
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	20.1	0.7122
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	21.8	0.7627
AT5G48290			Heavy metal transport/detoxifi...		Lus10025180 [exp]	22.2	0.6915
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	23.7	0.7058
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	24.6	0.7591

Compare expression of checked genes

Lus10025173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.