Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04235 206 / 1e-53 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016054 [exp] 2402 / 0 AT2G04235 218 / 2e-57 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G315950 [exp] 345 / 2e-98 AT2G04235 255 / 5e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025175 pacid=23167865 polypeptide=Lus10025175 locus=Lus10025175.g ID=Lus10025175.BGIv1.0 annot-version=v1.0 ATGGCGTCGAATCCTCGAACTATTGAAGCACTGTGCAACTCCGGGACCGATGAGGAGACTGTTGCGTTCCGGAAGAAGCGATTGCGCCGCGTCAGCTTCG CCGATGTCGAGATCACTTCCGTCCACGTCTTCGACCGCGATGAGGACTTGGAGATTCCTCCGGCCGACGCTTTGACCAAGAACCAGACCCCGGAGGAGGC TCACGAGCCGCGGAATGAAGTGTTAGGGTTTTTCAAGGGGCTTGCAGACGGTGACGATTTGGTAGAGACTTCTTTCAATGGAGACGAAGGCGACGATGAA GAGGAGGATGCTTGTGCTAGCAAGTTGTTTTTGCGGCCGTTTGAATCTCCAGGGAGTAGCGTTCGTGGTTCTGCTACTTCAAATGATGGAGACGAGTTTT TCGGTCCTGTTTCTGCTTATTTCATTAGACCTAGCCGGTTGTCAGATTCGGGTGCTTCAAATGATACTCATGAAGTAACCATGGATTCCACAGCATTCTC CATGCATTTCCGCAGTCTCATTAGATCAGAATCAGGAGACCTTAGGACACCTACTGACGTTGGCTCTAGGGAGCAAACCCCTTCCAGCATGAAAACATCT TCTGATCCCGAGAGTCGTATGACACTTACAAAGGCCACGCAGCTACAACTGTTTTCTAATCCCGAGGATAAGTCTACTGGCTGTAAATATTCTGATGCCA TGAGTCTTGTTGGCGAAAATGCGCCTAGTTATGATTACGCTAAGCTGTCTCCGAATTTGGAAGCTATTTTAGTTGAAGGCAGCAAAGTATTGCACTGTGT CTCCGTCCCTGATTGTACCAGTTCAAATATCTTGAAGAAGAACGAGAGTCCTTCAAAGTTTGAGAATGGAAATAGACATGTAAATCAAGATGGTTATGGG GATACGGCACTGGTAAAAGTTTGTGCCCTTGATGAGTCAGCTCAGACAGAGTCCACAGGTTTGTTAGGGGGTGATGAGGCTCATGGTGTTTCTGCAGCCA GCCATGATAACCAGAGTAATGGTTTTCTCTCGCCAAGTAGAAATGATTGCTTTCCAACTGATTTATCTAGTCATGAACCAGTTCAGAGTCTCATTCCCTT GATCGAGCTAAACACACCGGATCAGCAGCAACAGGAGAATAAATGCTTCACTGTTTCTGTGAGTACACCAGGTATATATGCTGAGTACCCTGGTGTCTCA AGTAAAACAAGTAATGTCCTTCAGGTTGAGTCTGTAAGAACTCTTAAAGAAGGTACACAGAATGGTACTTCTCCTGAAGATAAAAAAGGCAATCACCATG GCATTAGAACTAATGAGGAAGACTGTGGATCCTTGTCAACTGGGTTGGCATCCTCGCTTTCAGTTAAACAGCAGCATATGTTCAATCATGATGCTAAATC ATTTAGCACAATGTCTTATGTAACTCCTTCACCTAAACAAGCAGGGGCGTTTTTAATGAAGGAGAATGAAAGAAATGCTGAGATTATCTCATCTATCTGT CGAAGTAGTTCTCGGTTGAATGTGACACTTGAAAAGTCTAAACTCCTGTTATCTGGGTTAAGCTCATCTATACATGCTAGGGTGTCCCCTCTGAAAGAGA CTAGCAATATTGGTACAGGTGTTCCTGTAGCCAACTTAGAAGAACACTTTTTTGCTGTTGATACTGGTAGCATCCATGATCAGAGTGCAAGTTACAAGCG GAATGATTTATCTGGATCGCTTACATGTATTGATAAGTTGAGGGAATTGGAAGGGATCGCTTGTCTTGCTGAAAATGAAGAATATCTAGTTAATTTGTCA CCATCCGGAGTTTTTAAGGAAAAGCCTATTCAGCCAGTGTCGGAACCATCAGGAGCCTCATCACCTAAGCTCAAAATTGATCATGAAAGTGATGTCAAAT CAATTGATGCACCTGATAGGTTTGCTTCTCCTCCAACAAAGAGGCCAGCTCAAGAGTTGTCATTTCAAGAAAATTCTAGCAGTATGCCTACTCATTTGAA GGAACAGCTCACTGACCTTGCTACTATTGACTTGGATAAAGATGCGGATTTAATGGGTGATGCTGCTAGAAATTCGCATACCATTGGAAGTGCTTTCAAA TTGGAATCCTGGTTTAAGGAAAGGAGTGCAAACTCCAGGTCGCCTATTCTTGCAATTCACAACTTGGATGATTTCTCTCAAATGAAAACAGGAAGCGACA AGGACCAACAAGTTGACCAGGTTAACCTAGAAGATGTATCTGTCAGTGCTGCTAGTATGCAAGTGCTTGCTACTGGGATTGCTTTGAATAGTCATCAAGG AACTCCTAATGGAAGTGGCCTCATTGCTGTTTCCAAGCAATCGAAAGTGCTTATGGAATGGTCTGAAGCTTCACCTAATGTGAGCAGATATATAAATGAG CCATCAAGAATAAAGAGTCCTTGCAAAGAAGCACTGACCACGAGCCAAACTAGGGAAGAACCAGAGATGATTCTACATACGGATCCTGCGTCTAATGGAG GCAAAAATAGTGAAAGACATGCTGAAGTTCAGAATTCACGGAGTTGTTCTCCAAGAAAAAGAAAATGTGAAATAGAATCTGAGGATGCAGGTAGAAGTAG CAAGATCAAGTTGGATGGGATGGCATCTCTGAATTGCAACACCGATGGACTCAGCAAAGGCATCAAGGCATTCCAAATTTCACATAGTTCAGTTGTTGCA AGGGACATTGATAGCTTTTATATATGTGAACAAAGAAACGAGGAAGAACTGGAAGGGGGTAGAAATAACACATGCATGGTTGGAAGTCCTGACATTCAAG CAACCAATGGACCTAATCTGGAAGCCAGGCTGGATCTTGCTAATGGAAGTAGCGAAGTTGGGATGATTGGAGGTGACAGAACAGTGACGCACTGGAGTGA TGTTTCACAGAAACTTTCTTCAGACACAAGAGACTTGATTTCTCCATCTGTTGATTTTCTGAACATAAAATCAATTCATATGATCCAAGATATTTTGGCT CATCTGCAGAAATTAAAGACTCGTGGGATGTTCTTTTTGCAAATGCAACAGCATAGTCTTGTGAACTCTGATAAAGTCTTTAGCCTAACTAGTTCTGGTC GATGCTATTCTCCTGTGCAGAAATTATGTGATGAAACAAGCAAAAGAATGCCGGGCGGAACAGCTGAAATGAGAAGTTTGATTTGCAAGTTAGCCTTTGA AAAGACGAGAGTGAAACTACTAACTATCGAGCACCAGAAGCTTCTGAAAAGAAGAAAAGTACTTAGCATTGCAGTTCAAGAATCACAGATGCTAAAAACA GCTAAAGCTTTGTGTCTTCCTGTACCTAGTGAAGTTGACCTTCATGCTGGAGCGAGTTGTCAGAATAGTTATCACAGCAAAAACAAGGTCTCCCGAGAAA AGTTAGTTGCATCGAGGCATGAATTTGAAGCTTTACAGGAGAAGATACAAAGTTTGACTGAGTATTTCCAGGATTACTGCAAAATTGGAAGAGAAACTAG TTCTAGCGAGATAATAGCGATGCTTAATGATCAGTTGAACAAAAAAATCTCCTTAAGATTCCTCCATGAAGAGGTCCAGGATTTGGAAAACAAGAATGGT GTCATCAGCATTGTACTCAGCTACCTAGATTTTTTCTCTCAAAGATTCACCATAAATACTGCTCAGATTCAGACCTTATCGCTTTCAATCAAGTTGAATG AGGGAAAGATCATGAAGAACTTCCCCAACATGGGTGCTTGTCCTGCTTTTGCTTTTATTCTAAATGGTGACACCGCTAAGAATTATGCTTGCTCCACAAG TTTAGCACAGGAAACTAAAAGAGCCAGTTCACTCTTGCAAAACTTGTTAGACGTTCTTCAAGAATTACAAATTGCAAGGATAGAGCTCGGAAATCTAGTT GAAACAAGCTTTTCTTCCTCTGTCGACCAGCTCGATCTGCAGCTTTGTTTTGTTGACATCGGCAGTCATGCGAAGATGAATCTCGTGTTTGACATGACCT GCTTGAAACACGGAGTTTATCCTTGTGACATCCTCCCAAACAGAATACAAGTTTCGGCGTCACATATAGAGTCACTCCCAACACAGGTGAAAGCATCAGT CGATGGACTTGGAGTCGGGTATTTGAGGATCATAAGGATTTGCAGGTGTATTTCTCAGATGATGAGCGTGTGGTAA
AA sequence Show only first row Show all	>Lus10025175 pacid=23167865 polypeptide=Lus10025175 locus=Lus10025175.g ID=Lus10025175.BGIv1.0 annot-version=v1.0 MASNPRTIEALCNSGTDEETVAFRKKRLRRVSFADVEITSVHVFDRDEDLEIPPADALTKNQTPEEAHEPRNEVLGFFKGLADGDDLVETSFNGDEGDDE EEDACASKLFLRPFESPGSSVRGSATSNDGDEFFGPVSAYFIRPSRLSDSGASNDTHEVTMDSTAFSMHFRSLIRSESGDLRTPTDVGSREQTPSSMKTS SDPESRMTLTKATQLQLFSNPEDKSTGCKYSDAMSLVGENAPSYDYAKLSPNLEAILVEGSKVLHCVSVPDCTSSNILKKNESPSKFENGNRHVNQDGYG DTALVKVCALDESAQTESTGLLGGDEAHGVSAASHDNQSNGFLSPSRNDCFPTDLSSHEPVQSLIPLIELNTPDQQQQENKCFTVSVSTPGIYAEYPGVS SKTSNVLQVESVRTLKEGTQNGTSPEDKKGNHHGIRTNEEDCGSLSTGLASSLSVKQQHMFNHDAKSFSTMSYVTPSPKQAGAFLMKENERNAEIISSIC RSSSRLNVTLEKSKLLLSGLSSSIHARVSPLKETSNIGTGVPVANLEEHFFAVDTGSIHDQSASYKRNDLSGSLTCIDKLRELEGIACLAENEEYLVNLS PSGVFKEKPIQPVSEPSGASSPKLKIDHESDVKSIDAPDRFASPPTKRPAQELSFQENSSSMPTHLKEQLTDLATIDLDKDADLMGDAARNSHTIGSAFK LESWFKERSANSRSPILAIHNLDDFSQMKTGSDKDQQVDQVNLEDVSVSAASMQVLATGIALNSHQGTPNGSGLIAVSKQSKVLMEWSEASPNVSRYINE PSRIKSPCKEALTTSQTREEPEMILHTDPASNGGKNSERHAEVQNSRSCSPRKRKCEIESEDAGRSSKIKLDGMASLNCNTDGLSKGIKAFQISHSSVVA RDIDSFYICEQRNEEELEGGRNNTCMVGSPDIQATNGPNLEARLDLANGSSEVGMIGGDRTVTHWSDVSQKLSSDTRDLISPSVDFLNIKSIHMIQDILA HLQKLKTRGMFFLQMQQHSLVNSDKVFSLTSSGRCYSPVQKLCDETSKRMPGGTAEMRSLICKLAFEKTRVKLLTIEHQKLLKRRKVLSIAVQESQMLKT AKALCLPVPSEVDLHAGASCQNSYHSKNKVSREKLVASRHEFEALQEKIQSLTEYFQDYCKIGRETSSSEIIAMLNDQLNKKISLRFLHEEVQDLENKNG VISIVLSYLDFFSQRFTINTAQIQTLSLSIKLNEGKIMKNFPNMGACPAFAFILNGDTAKNYACSTSLAQETKRASSLLQNLLDVLQELQIARIELGNLV ETSFSSSVDQLDLQLCFVDIGSHAKMNLVFDMTCLKHGVYPCDILPNRIQVSASHIESLPTQVKASVDGLGVGYLRIIRICRCISQMMSVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04235			unknown protein		Lus10025175 [exp]	0	1
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	1.4	0.9510
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	3.5	0.9415
AT2G04235			unknown protein		Lus10016054 [exp]	4.0	0.9573
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	5.5	0.9330
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	6.2	0.9423
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	6.9	0.9077
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	8.5	0.9352
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	9.1	0.9095
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10009791 [exp]	9.3	0.9089
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	9.9	0.9368

Compare expression of checked genes

Lus10025175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.