Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66410 322 / 2e-112 PLP3B phosducin-like protein 3 homolog (.1) AT3G50960 306 / 2e-106 PLP3A phosducin-like protein 3 homolog (.1) AT2G18990 135 / 3e-39 TXND9 thioredoxin domain-containing protein 9 homolog (.1) AT3G25580 132 / 2e-38 Thioredoxin superfamily protein (.1) AT1G69880 39 / 0.0007 ATH8 thioredoxin H-type 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016055 [exp] 380 / 9e-136 AT5G66410 357 / 2e-126 phosducin-like protein 3 homolog (.1) Lus10013889 [exp] 120 / 3e-34 AT3G25580 255 / 1e-87 Thioredoxin superfamily protein (.1) Lus10026602 [exp] 81 / 1e-19 AT3G25580 168 / 3e-54 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G020400 [exp] 320 / 4e-112 AT5G66410 297 / 8e-103 phosducin-like protein 3 homolog (.1) Potri.001G297900 [exp] 122 / 1e-34 AT3G25580 286 / 3e-99 Thioredoxin superfamily protein (.1) Potri.009G092700 [exp] 121 / 5e-34 AT2G18990 290 / 2e-100 thioredoxin domain-containing protein 9 homolog (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025176 pacid=23167833 polypeptide=Lus10025176 locus=Lus10025176.g ID=Lus10025176.BGIv1.0 annot-version=v1.0 ATGGATCCAGATTCGGTTAAATCGACTTTGTCCAATCTAGCTTTCGGAAATGTGTTGGCGGCAGCTGCTCGCGATTACCAAAAGGAGTTGGTTGCTCAAG GCAAGGCTCAGTCATCAACTTCTGTTAACCAAGAAGTCGACCTTGATGATTTGATGGATGATCCAGAGTTAGAAAAACTACATGCTGACAGAATCGCGGC ATTGAAGAGAGAAGCTGAGAAACGAGAGTCCCTGCAAAGACAAGGACATGGAGAATACAGGGAGATAACAGAAGGGGATTTCTTGGGCGAAGTCACTAGG AGCGAGAAAGTTATTTGCCACTTTTACCATAAAGAGTTCTACCGATGCAAGATAGTAGATAAGCATTTAAAGGTTCTTGCTCCGAAACATCTGGATACCA AGTTTGTCAGGCTGGATGCAGAGAATGCTCCCTTCTTTGTTGCCAAACTTGGGATAAAAACTCTGCCTTGTGTCATTCTCTTCAGGAAAGGGATCGCATC AGATAGACTGGTTGGCTTCCAGGATCTGGGAGGCAAAGATGATTTTCCAACTAAGAAACTCGAAAACTACTTATTAAAGAAAGGTATCATTAGTGAGAAG AAGAGCAACGAGGAAGACGAGGAGGAGTATGACGAAAGCCGTCGAAGGACAGTGAGATCAACTGCCGAGGCTGATTCTGATTCGGATTGA
AA sequence Show only first row Show all	>Lus10025176 pacid=23167833 polypeptide=Lus10025176 locus=Lus10025176.g ID=Lus10025176.BGIv1.0 annot-version=v1.0 MDPDSVKSTLSNLAFGNVLAAAARDYQKELVAQGKAQSSTSVNQEVDLDDLMDDPELEKLHADRIAALKREAEKRESLQRQGHGEYREITEGDFLGEVTR SEKVICHFYHKEFYRCKIVDKHLKVLAPKHLDTKFVRLDAENAPFFVAKLGIKTLPCVILFRKGIASDRLVGFQDLGGKDDFPTKKLENYLLKKGIISEK KSNEEDEEEYDESRRRTVRSTAEADSDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66410		PLP3B	phosducin-like protein 3 homol...		Lus10025176 [exp]	0	1
AT4G35410			Clathrin adaptor complex small...		Lus10003641 [exp]	1.4	0.8747
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	4.7	0.8877
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10011545 [exp]	6.0	0.8241
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	6.6	0.8258
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10041291 [exp]	8.0	0.8216
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10027375 [exp]	12.0	0.8322
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	12.0	0.8600
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	13.9	0.8418
AT5G42770			Maf-like protein (.1.2)		Lus10002531 [exp]	15.9	0.7866
AT2G36410			Family of unknown function (DU...		Lus10035563 [exp]	19.2	0.8274

Compare expression of checked genes

Lus10025176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.