Plant FIBer expression Database

Lus10025177 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12680 654 / 0 unknown protein
AT5G40640 374 / 1e-122 unknown protein
AT3G27390 369 / 1e-120 unknown protein
AT4G37030 346 / 6e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016056
[exp]
955 / 0 AT4G12680 749 / 0.0 unknown protein
Lus10014575
[exp]
364 / 1e-117 AT5G40640 714 / 0.0 unknown protein
Lus10032110
[exp]
361 / 2e-117 AT3G27390 728 / 0.0 unknown protein
Lus10022317
[exp]
359 / 9e-117 AT3G27390 722 / 0.0 unknown protein
Lus10001003
[exp]
358 / 2e-116 AT4G37030 707 / 0.0 unknown protein
Lus10011021
[exp]
358 / 2e-116 AT4G37030 698 / 0.0 unknown protein
Lus10014881
[exp]
185 / 9e-53 AT3G27390 380 / 3e-128 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G170800
[exp]
696 / 0 AT4G12680 685 / 0.0 unknown protein
Potri.001G338900
[exp]
376 / 3e-123 AT5G40640 718 / 0.0 unknown protein
Potri.007G042400
[exp]
364 / 6e-119 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
356 / 5e-116 AT4G12680 411 / 9e-138 unknown protein
PFAM info
Representative CDS sequence
>Lus10025177 pacid=23167886 polypeptide=Lus10025177 locus=Lus10025177.g ID=Lus10025177.BGIv1.0 annot-version=v1.0
ATGGACGTTCCTGTCGGATTCCTCTCAACCTTATGGAGCTTCTTGTCATTCTTGCCCTTCTTCCTCTTGCTCTTCATCCTTGGCCTTCTCAAAGCTGTAT
TCATTGCTCCAATTTCTGTGGTGATCATACTATTTGGGAACTCAGCTGTGATTCTTGGCCTTTGGATTGCTCATTTTCTGTGGACTTACTACTGTGTTGC
CAGAACAAAGAGGCTTGGCTTGGTTTTGAAGATTGTGGTGATGTTGCTTTTACCAGTGCCTTTGGTCCTATGGCCACCGGTTGGAATTGTTGGAAGCCTT
TTGGGTGGAATTGGGTATGGCTTTTTTGCCCCTTTGCTTGCTACTTTTGAAGCTGTTGGGGAGAATGTCAAGGACAAGTTCTACCATTGTTTTGCTGATG
GTTGTGTCTCCACTATCAAATGCAGCTGCACAGTTGTTAGGGATTTTACTGATTTTTGCTTCCATTCCTACTTCTCCTTCATGGATGAATTAAGTGAGAA
AGTCCTTCCAGATGAAAAGCCTATGGATGTAAAGTTGACGAGATTGCCAAGTTGTTTCTTGGTAACCCTGATCAGTGTGCCGGTGGATATGCTTCTGATT
ACTGCCCTTGCCTTGTGGAAAAGCCCTTACATGCTCTTGCAAGGTTGGAAGAGGTTATTGGAAGATTTGATTGGTAGGGAAGGACCGTTCTTGGAGACAG
CGTGTGTTCCTTTTGCTGGCCTTGCAATTCTCTTGTGGCCTTTAGCTGTTGTGGCATCTGTTTTAGGAGCTTTTGTGTCCAGCTTCTTTCTGGGATTGTA
CAGTGGAGTTGTTGTCCATCAGGAAGATTCACTCCGGTCCGGGTTGGCCTATATCGTTGCTGTGGTATCATTGTTCGACGAATATGTCAACGATCTACTT
TACTTGAGAGAAGGGTCATGCTTTCCCAGATCGCAACTACGAGTTCTTAACTTCCATGATTCATGGACAGCCAGGCCAAAGTATCGGAAGAACCAGGCTC
CAAAACCAGGTGATAAAGATGGGAGCTTGAATAGGAGAAGACAGAACTCACTTAACGGGAAACTCGTACCGGAAAGGACAAGATCATTGAAGCGCACCAT
TCAGGAATTCAAGGCAGTACAGATATGGGACTGGCTGTTCAAATCCTGTGAAGTGAATGGAAGAATACTTCTGAGAGAAGGGCTGATAGATACCAAGGAC
GTTAAAGAATGCCTTGTCAAAGGCAATTGCAAGAAGTTGGGGGTTAAACTGCCCGCTTGGACCATATTACAGTGCTTACTTACCTCCGCAAAGCAAGATT
CATCTGGGTTGGTGATCTCGGATGAGGTTGAATTAACTGCTGCCAACGGGCCAAGGGATAAAGTTTTTGATTGGTTCATAGAACCATTGTTGATCATGAA
AGAGCAGATCAGGAAACTTGGACTGGACGAGAACGAGGAGATGAGTCTGAGAAGGCTAGTAATGGTGAACAGGAATGAAACACCTGAGGATTGGGATGAA
GAAGGTTTCCCAAGTGGTGACCATGTTAGAAGAGCTCAGTTACAAGCCCTTATTAGAAGACTGCAAGGGATTGTAGCATCGATGTCTCGTATTCCAACTT
TCAGGCGGCGGTTCAAGAATCTGGTGAAAGTATTATCAATTGAAGCGATTCAGGTTGATGCTTCAACAAAGCGGATGGGAGGAGTGTTAAGCACCATGTC
CAAGGGAATAAGCAGCAGCAGAAGCCCTGTAGCAACCACGGATGGTATGGATAAAGATAGCAATGAATCTGATCAAACCAAGGATGGCATTGAGTTGTCC
CTATGA
AA sequence
>Lus10025177 pacid=23167886 polypeptide=Lus10025177 locus=Lus10025177.g ID=Lus10025177.BGIv1.0 annot-version=v1.0
MDVPVGFLSTLWSFLSFLPFFLLLFILGLLKAVFIAPISVVIILFGNSAVILGLWIAHFLWTYYCVARTKRLGLVLKIVVMLLLPVPLVLWPPVGIVGSL
LGGIGYGFFAPLLATFEAVGENVKDKFYHCFADGCVSTIKCSCTVVRDFTDFCFHSYFSFMDELSEKVLPDEKPMDVKLTRLPSCFLVTLISVPVDMLLI
TALALWKSPYMLLQGWKRLLEDLIGREGPFLETACVPFAGLAILLWPLAVVASVLGAFVSSFFLGLYSGVVVHQEDSLRSGLAYIVAVVSLFDEYVNDLL
YLREGSCFPRSQLRVLNFHDSWTARPKYRKNQAPKPGDKDGSLNRRRQNSLNGKLVPERTRSLKRTIQEFKAVQIWDWLFKSCEVNGRILLREGLIDTKD
VKECLVKGNCKKLGVKLPAWTILQCLLTSAKQDSSGLVISDEVELTAANGPRDKVFDWFIEPLLIMKEQIRKLGLDENEEMSLRRLVMVNRNETPEDWDE
EGFPSGDHVRRAQLQALIRRLQGIVASMSRIPTFRRRFKNLVKVLSIEAIQVDASTKRMGGVLSTMSKGISSSRSPVATTDGMDKDSNESDQTKDGIELS
L

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G12680 unknown protein Lus10025177
[exp]
0 1
AT4G12680 unknown protein Lus10016056
[exp]
5.3 0.6709
AT4G32570 ZIM TIFY8 TIFY domain protein 8 (.1) Lus10013138
[exp]
8.2 0.6994
AT4G33280 B3 REM16 AP2/B3-like transcriptional fa... Lus10032871
[exp]
18.5 0.6919
AT3G13670 Protein kinase family protein ... Lus10042455
[exp]
23.7 0.6894
AT3G21480 BRCT domain-containing DNA rep... Lus10012790
[exp]
25.6 0.6769
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Lus10031223
[exp]
30.5 0.6716
AT1G12790 unknown protein Lus10003529
[exp]
52.1 0.6338
AT1G33060 NAC ANAC014 NAC 014 (.1.2) Lus10005143
[exp]
59.4 0.6277
AT4G11410 NAD(P)-binding Rossmann-fold s... Lus10028781
[exp]
71.8 0.6287
AT3G18940 clast3-related (.1) Lus10021018
[exp]
95.9 0.5466

Lus10025177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.