Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03795 448 / 8e-154 Exostosin family protein (.1) AT3G07620 426 / 4e-146 Exostosin family protein (.1) AT5G25310 400 / 1e-135 Exostosin family protein (.1) AT5G11130 366 / 2e-122 Exostosin family protein (.1) AT5G33290 362 / 1e-120 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 359 / 1e-119 Exostosin family protein (.1.3) AT5G20260 349 / 5e-116 Exostosin family protein (.1) AT4G16745 309 / 2e-99 Exostosin family protein (.1.2) AT5G25820 305 / 1e-96 Exostosin family protein (.1) AT5G19670 300 / 2e-95 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016058 [exp] 638 / 0 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10039142 [exp] 487 / 1e-168 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 469 / 2e-161 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 465 / 4e-160 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10001917 [exp] 424 / 2e-144 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10005186 [exp] 387 / 2e-130 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 369 / 5e-122 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10027707 [exp] 365 / 5e-122 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10001958 [exp] 313 / 5e-104 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171100 [exp] 607 / 0 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 478 / 5e-166 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 476 / 1e-165 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 400 / 1e-135 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 384 / 2e-129 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 383 / 3e-129 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064600 [exp] 382 / 1e-128 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 369 / 8e-124 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 368 / 3e-123 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.006G064900 [exp] 365 / 5e-122 AT5G20260 530 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10025178 pacid=23167812 polypeptide=Lus10025178 locus=Lus10025178.g ID=Lus10025178.BGIv1.0 annot-version=v1.0 ATGAGGCTTCCTGATCACCATCCTACTTCCCCTCCTCCTCCTCCTTCTTCTTCCTTCCCAATCTCATTCATCCTCATCACCATTCCGCTCCTTCTCATCT CCGCCTTCGCCTTCTTCGCTCTGTCGAATCCACCTGCGGTATTGATCTCCTTCCCTCATCCTGCTCCTGCTACTCACCACTCCCACCCAGACGACCTCTC AACCATTAAACCTTCTTCTTCCAACTCAACCCCCAAACCTACACCACCATCACCGTCGGTAGTACTGGTGAAGAGGTACAGTAAGCTCGAGAAGGCCGAG GCCAATCTGGCCAAGGTAAGGTCCTTGATTCGAGCCGCTGCTGCTCGAATCGGGAACCTAACCCTGGAGGACCCGGACTACGTCCCCAAGGGCGCAATCT ACAGGAACGCCAACGCGTTCCACAAGAGCTACCTTGAGATGGAGAGGGTGTTTAAGATGTACGTGTACAAAGAAGGCGAACCGCCCATCTTTCACGACGG TCCTTGTCGGAGCATATACTCGTCTGAAGGGAGGTTTATCCACGAGATGGAGAAAGGGGCGGTTAGTAATTTGTACGTGACAGAGGACCCTGAAGAGGCG CTTGTGTACTTTTTGCCGTTTAGCGTTGTGAGGATGGTTCAGTACTTGTACGAGGATGATGGATCTCGTGATACCGAAGGGATCGGGCGTGCTGTGGTCG ACTATATCGATGTTATTTCGGCTAAGTATCTGTTTTGGAACCGGAGCCTCGGAGCTGACCATTTCATGCTCTCTTGCCATGATTGGGGGCCAAGAGCAAC AAGCTACAACAAAGAACTATACAACAACTCCATCAGAGTCCTATGCAACGCCAACACATCAGAAGGGTTCAACCCATCAAAGGACGCTTCCTTCCCGGAA ATCCATCTCCGAACAGGGGAAATTACCGGCCTAATTGGCGGGCCATCGCCGTCTCAACGGTCAATCCTAGCCTTCTTCGCCGGCCGACTCCATGGCCATA TAAGGAAGCTACTGCTAGACCAGTGGAAAGATAAATTAGACCAAGACGTCCAAGTATTCGACAGCCTCCCTCCCGGCGTATCCTACGAATCCAAGCTCCG TAACAGCAAATTCTGCCTCTGCCCCAGCGGATATGAGGTAGCCAGTCCGAGAGTTGTCGAAGCAATCTACGCAGAATGTGTGCCGGTGCTGATCTCGGAC GGGTATGTGCCGCCATTCAGCGACGTCCTGAACTGGAAGGCGTTCTCGGTGGAGATAGAAGTGAAGAATATCCATAGAATTAAGGAGATTTTGATGGGAA TTTCTCAGGAACAGTATCTGACGATGCAGAGGAGGGTGAAGCAAGTTCAACGGCACTTCGTGGCTAACGGCCCTACCAAGAGATATGACGTTTTTCATAT GACAGTTCATTCTATTTGGCTCCGGCGTCTCAACATTCGGGTTCAGGATTCAGATCTTTAA
AA sequence Show only first row Show all	>Lus10025178 pacid=23167812 polypeptide=Lus10025178 locus=Lus10025178.g ID=Lus10025178.BGIv1.0 annot-version=v1.0 MRLPDHHPTSPPPPPSSSFPISFILITIPLLLISAFAFFALSNPPAVLISFPHPAPATHHSHPDDLSTIKPSSSNSTPKPTPPSPSVVLVKRYSKLEKAE ANLAKVRSLIRAAAARIGNLTLEDPDYVPKGAIYRNANAFHKSYLEMERVFKMYVYKEGEPPIFHDGPCRSIYSSEGRFIHEMEKGAVSNLYVTEDPEEA LVYFLPFSVVRMVQYLYEDDGSRDTEGIGRAVVDYIDVISAKYLFWNRSLGADHFMLSCHDWGPRATSYNKELYNNSIRVLCNANTSEGFNPSKDASFPE IHLRTGEITGLIGGPSPSQRSILAFFAGRLHGHIRKLLLDQWKDKLDQDVQVFDSLPPGVSYESKLRNSKFCLCPSGYEVASPRVVEAIYAECVPVLISD GYVPPFSDVLNWKAFSVEIEVKNIHRIKEILMGISQEQYLTMQRRVKQVQRHFVANGPTKRYDVFHMTVHSIWLRRLNIRVQDSDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	0	1
AT4G21310			Protein of unknown function (D...		Lus10007626 [exp]	1.0	0.9528
AT4G21310			Protein of unknown function (D...		Lus10018386 [exp]	2.4	0.9247
AT5G46530			AWPM-19-like family protein (....		Lus10015255 [exp]	3.5	0.9171
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	11.0	0.8223
AT1G14730			Cytochrome b561/ferric reducta...		Lus10034427 [exp]	11.8	0.8727
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	12.5	0.8074
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	16.9	0.8176
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	17.5	0.8520
AT3G61940		ATMTPA1, MTPA1	Cation efflux family protein (...		Lus10012604 [exp]	19.2	0.7872
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	20.6	0.7870

Compare expression of checked genes

Lus10025178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.