Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14400 254 / 8e-83 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) AT5G05690 160 / 2e-46 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 160 / 4e-45 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G50660 143 / 8e-39 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G13730 135 / 4e-36 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G19230 127 / 4e-33 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT1G12740 125 / 1e-32 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT5G45340 125 / 1e-32 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G73340 119 / 4e-30 Cytochrome P450 superfamily protein (.1) AT3G30180 112 / 9e-28 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016065 [exp] 520 / 0 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10024016 [exp] 197 / 1e-59 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 192 / 2e-57 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10040193 [exp] 168 / 3e-48 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10022298 [exp] 161 / 1e-47 AT5G14400 282 / 3e-94 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10028297 [exp] 155 / 8e-45 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10030404 [exp] 154 / 7e-44 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 154 / 3e-43 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028345 [exp] 144 / 3e-39 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171700 [exp] 382 / 2e-131 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 252 / 1e-80 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.007G026500 [exp] 204 / 4e-62 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 199 / 3e-60 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 169 / 6e-49 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 163 / 2e-46 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.017G154600 [exp] 141 / 3e-38 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.007G018400 [exp] 138 / 3e-37 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.003G038200 [exp] 137 / 9e-37 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.001G200100 [exp] 136 / 2e-36 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10025183 pacid=23167790 polypeptide=Lus10025183 locus=Lus10025183.g ID=Lus10025183.BGIv1.0 annot-version=v1.0 ATGTTGGTAGCCGTTGGAGACACTCACAAGAGGCTTAGGAATATGGCTCTTCATCTCGTCAATGTCACTAAATCCAAGCCTGAGTTTTTGCATGATGTGG AAATGTCTGCAACCAGGATCCTGAGATCTTGGCAGGGGAAGCGTCAGTTTACGTTCAATGTGATTGTCAAGCAAGTTCTGGGGTTAAAACCAGAGGATCC TGTAACCACAAGGATTCTTGAGGAGTTCTTGACTTTTATGAAGGGTCTCATTTCTCTTCCCCTCTATGTTCCTGGAACTCCATATGCTAGAGCTGTTCAG GCTAGAAGGAGGATATCTTCTTCTGTCAAAGCAATTATAGAGGAAAGAAGGAGCAGAAGAAGAATCAAGGAAGGAAGAGGAGATGGTGCTGGGAAAGAAA AAGTGGATTTCCTTCAGATACTGATTGGTTTGGATGCCTTATCTGAAGATGAAAAATTGGAGCATGAGAACATAAGAAGCAGGAAGGAGGAAGGGGAGCT ATTGAGCTGGGAAGATTACAAGAAGATGGAATTTACACAAAATTCAAATTTGTGCACAGGAAAGGCCTTGAAAGATGTCAAATTCAGAGATTACTTCATT CCATCTGGATGGAAGGTTCTGCCTGCTTTTACTGCTGTTCATATGGATGTATCTTTACATCCAAATGCTCCTCACTTTGATCCCTGGAGGTGGGAGAAAG AAGATCAAACATGCAAGAAATTCACACCTTTTGATGGAGGCTCTAGGTTCTGTCCTGGGTCTGAACTGGCTAGAGTTGAAGTTTCATTTTTCCTCCACCA CCTTGTACACAGTTTCAGGTGGAGTAGTGAAGATTCAGATGGGCCACTGGCATTTCCTTATGTTGAATTTGACAAGGGTCTGCTTATAAATTTGGAACAT TGTACATCTCAACTGTGA
AA sequence Show only first row Show all	>Lus10025183 pacid=23167790 polypeptide=Lus10025183 locus=Lus10025183.g ID=Lus10025183.BGIv1.0 annot-version=v1.0 MLVAVGDTHKRLRNMALHLVNVTKSKPEFLHDVEMSATRILRSWQGKRQFTFNVIVKQVLGLKPEDPVTTRILEEFLTFMKGLISLPLYVPGTPYARAVQ ARRRISSSVKAIIEERRSRRRIKEGRGDGAGKEKVDFLQILIGLDALSEDEKLEHENIRSRKEEGELLSWEDYKKMEFTQNSNLCTGKALKDVKFRDYFI PSGWKVLPAFTAVHMDVSLHPNAPHFDPWRWEKEDQTCKKFTPFDGGSRFCPGSELARVEVSFFLHHLVHSFRWSSEDSDGPLAFPYVEFDKGLLINLEH CTSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14400		CYP724A1	"cytochrome P450, family 724, ...		Lus10025183 [exp]	0	1
AT3G61830	ARF	ARF18	auxin response factor 18 (.1)		Lus10041340 [exp]	1.0	0.9066
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021542 [exp]	6.3	0.8624
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10030490 [exp]	22.0	0.8872
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015842 [exp]	26.9	0.8812
AT1G06260			Cysteine proteinases superfami...		Lus10039901 [exp]	29.7	0.8810
AT1G72460			Leucine-rich repeat protein ki...		Lus10037687 [exp]	33.8	0.8786
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003457 [exp]	49.6	0.8529
					Lus10036535 [exp]	57.2	0.8672
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041681 [exp]	180.0	0.8559
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	182.9	0.8479

Compare expression of checked genes

Lus10025183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.