Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17170 366 / 1e-130 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT4G35860 345 / 3e-122 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17160 318 / 6e-112 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT5G60860 194 / 1e-62 AtRABA1f RAB GTPase homolog A1F (.1) AT5G45750 193 / 3e-62 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18430 192 / 5e-62 AtRABA1e RAB GTPase homolog A1E (.1) AT3G46830 191 / 1e-61 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT3G15060 191 / 2e-61 AtRABA1g RAB GTPase homolog A1G (.1) AT3G12160 191 / 2e-61 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT1G16920 190 / 3e-61 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016066 [exp] 367 / 2e-130 AT4G17170 369 / 3e-131 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10038744 [exp] 362 / 5e-129 AT4G17170 434 / 2e-157 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10039114 [exp] 335 / 2e-118 AT4G17170 407 / 5e-147 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10015297 [exp] 195 / 4e-63 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 195 / 5e-63 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10020746 [exp] 194 / 8e-63 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10013961 [exp] 193 / 3e-62 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10029789 [exp] 192 / 7e-62 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10017679 [exp] 192 / 7e-62 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002200 [exp] 362 / 4e-129 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Potri.009G159600 [exp] 351 / 1e-124 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.011G070300 [exp] 194 / 7e-63 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 193 / 2e-62 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.011G061300 [exp] 192 / 4e-62 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.001G270100 [exp] 192 / 5e-62 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.013G123600 [exp] 191 / 9e-62 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 191 / 1e-61 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.001G374000 [exp] 191 / 2e-61 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.003G081800 [exp] 190 / 3e-61 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025184 pacid=23167782 polypeptide=Lus10025184 locus=Lus10025184.g ID=Lus10025184.BGIv1.0 annot-version=v1.0 ATGTCGTACGCTTATCTCTTCAAGTACATCATCATTGGCGATACAGGAGTTGGAAAATCATGCCTCCTTCTGCAGTTCACGGACAAGAGATTTCAGCCGG TCCATGACTTGACGATTGGCGTTGAATTTGGAGCTCGGATGATCAACATTGACACCAAGCCGATCAAGCTCCAAATATGGGACACGGCCGGTCAAGAGTC GTTCAGATCCATTACAAGGTCTTATTACCGAGGAGCTGCTGGTGCACTTCTAGTCTATGATATTACCAGGAGGGAGACATTCAATCACTTGACTAGCTGG CTGGAGGATGCAAGGCAGCATGCCAATTCCAACATGACAATAATGCTAATCGGCAACAAATGCGACCTTTCGCATAGAAGAGCTGTGAGTGTTGAGGAAG GCGAGCAATTTGCAAAGGAGAACGGACTAGTATTCATGGAGGCCTCTGCAAAAACCGCACAGAATGTCGAAGAGGCATTCATCAACACTGCGGGGAAAAT CTACAAGAAGATCGAGGATGGTGTACTCGACATATCAAATGAGTCGTATGGGATAAAGCTTGGTTATGGAGGACCGTCTGGACCGTCAACTGGTGGTGGC ACAGCTGCTCAAGGAGCTCCCTGCTGCGGTTGA
AA sequence Show only first row Show all	>Lus10025184 pacid=23167782 polypeptide=Lus10025184 locus=Lus10025184.g ID=Lus10025184.BGIv1.0 annot-version=v1.0 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDTKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW LEDARQHANSNMTIMLIGNKCDLSHRRAVSVEEGEQFAKENGLVFMEASAKTAQNVEEAFINTAGKIYKKIEDGVLDISNESYGIKLGYGGPSGPSTGGG TAAQGAPCCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	0	1
AT1G08220			unknown protein		Lus10005355 [exp]	1.4	0.8874
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	1.7	0.8842
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	3.9	0.8963
AT5G38380			unknown protein		Lus10009167 [exp]	4.0	0.8400
AT5G18620		CHR17	chromatin remodeling factor17 ...		Lus10012813 [exp]	4.6	0.8705
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	4.9	0.8802
AT2G37195			unknown protein		Lus10019937 [exp]	5.9	0.8768
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	15.4	0.7831
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	16.1	0.8518
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	16.4	0.8647

Compare expression of checked genes

Lus10025184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.