Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39820 464 / 7e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016067 [exp] 696 / 0 AT4G39820 463 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079300 [exp] 521 / 0 AT4G39820 467 / 6e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025185 pacid=23167854 polypeptide=Lus10025185 locus=Lus10025185.g ID=Lus10025185.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCTGACTCACTCCATTTGCAACCTGAACCTTCACCACCATCCAGTGATCCACTCTCCAGCAAATTCGCATCCCTCAACGACCTAGCTCACG AGCTCGCATCTCTCCAAGACCTCGCCAACCGCGGTTCATGGCGATCAATACTCGATAAAGTTGCTCGAGCAAGATCACTCTCTCTTCTCACAATGCCACA CGACCACCTCACCTATTTGGCATACAACGCCCTTGCTTTCATCAAGCTACGGCAGTTCAATGAAGCCCTTACCGAACTCGAATCAGTCGACGAGTTTGAC AGCCACCATTACCGCTATGAAACCTATCCGAAAATATACCCGGGCAGGACTGGTTCCATGGTTCCTTTCTGTCTCCGGTGGCTTATTGTATTGGTTCACA TGAAATTGGGGAATCGGCCAGAAGGTCTGGACCGGCTGTACCTTCTGCTCGATTTCGTTCGCGGCAAGATGAACGAAAAGGAGATATCTTCGGCTTCACT CCAAATGTGGAAGAAGAGGGAGGTTTTTGTTGTGAACAACATAGTTACTGAGCACATGAAGGGTAAGGAATTTGGTATCTGTTTGGATCTGATCAAGGGT CTTTTCGATCAGGGAAGTTTGGATCCTCATCTATTGTCGAAGTTAGGGTACATACAAATGCAAATGGGGGATCTAGAGGGTGCTAATGGCTCATTTGATA AAGTGGAGAATTTGTTGAATGATCGAAAGAGCGAGGATGATAATCTCGTGGAGTTAAAGAACATGGTGAGCAGGAACAAAGCTTTGATGTACTTGGTGGA TAAGGACTATGTGTCTGCAGTGAGGGAGTATGATGGATGTATCGAGCGAGATGCCATGGATGCAGTGGCGATCAACAACAAAGCAATTTGCTTGATGTAC TTAAGAGACTTGTCGGATTCGATCAAGGTGTTGGAGAATTCGCTCGAGAGCGTGCCCACGGTGGCTTTGAACGAGACTCTCGTGGTGAATTTGTGTAGCA TGTACGAGTTGGCGTATGTTAATCATTCAGATGTGAAGCGGACGCTGAGCAATTGGATCTCGAAGGTTGCTCCTGATGATTTCGATTCTTCTTGTACTAG GATGTGA
AA sequence Show only first row Show all	>Lus10025185 pacid=23167854 polypeptide=Lus10025185 locus=Lus10025185.g ID=Lus10025185.BGIv1.0 annot-version=v1.0 MEEADSLHLQPEPSPPSSDPLSSKFASLNDLAHELASLQDLANRGSWRSILDKVARARSLSLLTMPHDHLTYLAYNALAFIKLRQFNEALTELESVDEFD SHHYRYETYPKIYPGRTGSMVPFCLRWLIVLVHMKLGNRPEGLDRLYLLLDFVRGKMNEKEISSASLQMWKKREVFVVNNIVTEHMKGKEFGICLDLIKG LFDQGSLDPHLLSKLGYIQMQMGDLEGANGSFDKVENLLNDRKSEDDNLVELKNMVSRNKALMYLVDKDYVSAVREYDGCIERDAMDAVAINNKAICLMY LRDLSDSIKVLENSLESVPTVALNETLVVNLCSMYELAYVNHSDVKRTLSNWISKVAPDDFDSSCTRM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	0	1
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10016067 [exp]	2.4	0.9012
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	2.6	0.9137
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	7.3	0.9051
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	7.7	0.8603
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	9.4	0.9004
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	10.0	0.8681
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10019284 [exp]	11.5	0.8662
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10035360 [exp]	11.7	0.7976
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	12.0	0.8615
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031309 [exp]	13.2	0.8819

Compare expression of checked genes

Lus10025185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.