Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48300 887 / 0 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT5G19220 536 / 0 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 531 / 0 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 489 / 1e-169 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 478 / 3e-165 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT1G05610 420 / 5e-143 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT2G04650 46 / 6e-05 ADP-glucose pyrophosphorylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016069 [exp] 985 / 0 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10034053 [exp] 535 / 0 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10010515 [exp] 520 / 0 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 512 / 2e-178 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10023553 [exp] 497 / 1e-172 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10010088 [exp] 496 / 3e-172 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10040437 [exp] 468 / 3e-161 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10042456 [exp] 393 / 4e-132 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 348 / 5e-115 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171800 [exp] 918 / 0 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.008G195100 [exp] 537 / 0 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.005G229700 [exp] 532 / 0 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1) Potri.002G033400 [exp] 530 / 0 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.014G110000 [exp] 525 / 0 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.004G157100 [exp] 492 / 2e-170 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.009G118800 [exp] 492 / 2e-170 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.007G146100 [exp] 474 / 5e-164 AT1G05610 529 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.017G001700 [exp] 468 / 5e-161 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.006G090300 [exp] 46 / 3e-05 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00483 [flax] [poplar] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Lus10025187 pacid=23167775 polypeptide=Lus10025187 locus=Lus10025187.g ID=Lus10025187.BGIv1.0 annot-version=v1.0 ATGGCGACCATGGCGGGGATCGGAACTCTAAAGGTGCCCTCGTCGTCGAAGAATTCTCATGCTTCCTCGTCCTCCAATGTCGGCCGAAAATCGGCCGTTT ACAGGAGCTTGGGGTTTTGGTGGTCGAAATTCTCGGGGGAGAAGATTTTCTCCAAGCCATTGTTTGCGCGACGGAATGTTCGGAATAGGAGGTCTCCATC GATCCTTTCTCCGAAAGCTGTTTCGGATTCCAAGAACTCTCAGACGTGTCTTGATCCGGATGCCAGTAGAAGTGTTCTAGGCATAATCCTTGGAGGTGGC GCTGGAACTCGCCTTTACCCACTGACCAAGAAGAGGGCAAAACCTGCTGTGCCTCTGGGAGCAAACTACAGGCTCATCGATATTCCTGTCAGCAATTGTT TGAACAGCAACATATCTAAGATTTATGTTCTTACTCAATTCAATTCTGCATCCCTGAATCGTCACCTTTCTCGAGCTTATGCAAGCAACATGGGCGGCTA CCAGAACGAAGGCTTTGTGGAGGTCCTTGCAGCTCAGCAGAGTCCAGAAAATCCCAACTGGTTTCAGGGGACAGCTGATGCGGTGAGGCAGTATTTATGG TTGTTTGAGGAGCACAATGTCTTGGAGTTCTTGGTTCTTGCTGGGGATCATCTTTACCGAATGGATTACGAGAAATTTATTCAAGCACATAGGGAAACAG ATGCAGACATCACTGTGGCTGCATTGCCAATGGATGAAAAGCGTGCTACTGCATTTGGTCTGATGAAAATTGACGAAGAAGGTCGTATTATAGAGTTTGC CGAGAAACCTAAAGGAGAGCAGCTTAAAGCTATGAAGGTTGATACAACTATCTTAGGTCTGGATGATGAAAGAGCCAAAGAGATGCCCTACATTGCTAGC ATGGGTATATATGTTGTCAGCAAACATGTGATGCTAGAGCTACTTAGAGATAAGTTTCCTGGAGCCAATGATTTTGGTAGCGAAGTTATTCCAGGAGCTA CGTCCATCGGGATGAGAGTGCAAGCTTACCTATATGATGGCTATTGGGAGGACATTGGTACAATTGAGGCCTTCTACAATGCAAATCTTGGAATAACGAA GAAACCGATTCCAGATTTCAGCTTCTATGATCGTTCCTCGCCCATCTACACACAACCACGATATTTGCCTCCATCCAAGATGCTTGATGCTGATGTTACA GACAGCGTTATCGGGGAAGGATGTGTTATTAAGAACTGCAAAATCCATCATTCCGTGGTTGGGCTTCGGTCTTGCATCTCAGAAGGTGCAATCATAGAAG ATACGCTACTGATGGGAGCTGACTACTATGAGACCGACGCGGATAGGAGGTTGTTGGCTGCTAAGGGCAGCGTCCCAATCGGAATCGGAAAGAACTCTCA CATCAAGAGGGCGATCATCGATAAGAATGCTCGTATCGGCGACAATGTTAAGATCATCAACAGTGACAATGTGCAAGAAGCAGCAAGGGAAACTGATGGG TATTTCATAAAGAGTGGGATCGTGACAGTGATCAAGGACGCCTTGATTCCAAGTGGAACTGTGATCTAA
AA sequence Show only first row Show all	>Lus10025187 pacid=23167775 polypeptide=Lus10025187 locus=Lus10025187.g ID=Lus10025187.BGIv1.0 annot-version=v1.0 MATMAGIGTLKVPSSSKNSHASSSSNVGRKSAVYRSLGFWWSKFSGEKIFSKPLFARRNVRNRRSPSILSPKAVSDSKNSQTCLDPDASRSVLGIILGGG AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYQNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW LFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS MGIYVVSKHVMLELLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSSPIYTQPRYLPPSKMLDADVT DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRLLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIINSDNVQEAARETDG YFIKSGIVTVIKDALIPSGTVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10025187 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	4.5	0.8751
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10016069 [exp]	6.3	0.8696
AT1G11860			Glycine cleavage T-protein fam...		Lus10001441 [exp]	8.7	0.8638
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10035408 [exp]	10.1	0.8393
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	12.0	0.8620
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	12.4	0.8698
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	16.1	0.8624
AT3G61870			unknown protein		Lus10012617 [exp]	17.0	0.8714
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	18.8	0.8453
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	26.5	0.8509

Compare expression of checked genes

Lus10025187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.