Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12640 520 / 2e-172 RNA recognition motif (RRM)-containing protein (.1) AT2G43410 143 / 9e-35 FPA RNA binding (.1.2.3.4) AT3G61860 63 / 1e-10 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G46610 58 / 7e-09 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37340 47 / 2e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT5G19350 47 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 46 / 7e-05 ATRBP45A RNA-binding protein 45A (.1) AT1G49600 44 / 0.0005 ATRBP47A RNA-binding protein 47A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016070 [exp] 1336 / 0 AT4G12640 554 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10019359 [exp] 142 / 2e-34 AT2G43410 624 / 0.0 RNA binding (.1.2.3.4) Lus10007419 [exp] 140 / 9e-34 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10030226 [exp] 58 / 7e-09 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027886 [exp] 52 / 3e-06 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 52 / 3e-06 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10030482 [exp] 48 / 2e-05 AT3G11400 459 / 9e-165 eukaryotic translation initiation factor 3G1 (.1.2) Lus10003987 [exp] 48 / 2e-05 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10010042 [exp] 49 / 3e-05 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171900 [exp] 724 / 0 AT4G12640 698 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.007G131100 [exp] 148 / 2e-36 AT2G43410 633 / 0.0 RNA binding (.1.2.3.4) Potri.017G026600 [exp] 148 / 3e-36 AT2G43410 659 / 0.0 RNA binding (.1.2.3.4) Potri.001G304000 [exp] 58 / 3e-08 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 52 / 1e-06 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G054400 [exp] 52 / 1e-06 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G191500 [exp] 48 / 3e-05 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.016G081700 [exp] 47 / 3e-05 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 47 / 4e-05 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.018G002300 [exp] 47 / 6e-05 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0616 [flax] [poplar] SPOC PF07744 [flax] [poplar] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Lus10025188 pacid=23167798 polypeptide=Lus10025188 locus=Lus10025188.g ID=Lus10025188.BGIv1.0 annot-version=v1.0 ATGAATATCCGAGGAGGAGGAGGCAGGGAACGGTTGCGGAGGGATCCGCCGCCATCTCGATCCGACGACGGAGGAGGCGGCAGGCGGCCGTCGAGGCATC TGTGGGTAGGGAATTTGTCTCAAAACATACAGGAGCAGGATCTCACTCGACACTTTCTAGAGTTCGGGGAGCTTGAGAGCGTGGCTTTCCAGCCTGGACG GCACTTCGCTTTCGTCAATTTCAAGAACGACGAGGACGGAATCGCCGCCTTGAAGGTTCTTCAGGGGTTCCCCGTCGATGGAAACCCTCTTAAGATTGAG TTTGTCAAGGTGGATAAGCCATCAGCACAGTCACGTGATGAAGATTACAGGCAGAGGCGAGATCAAAGGCCAGCACCAAGAGAATCCCCTTTCTCACATA GGGACTCTAAGGTGCATGCTGGTAGTCCAGATGCTTACTATCCCGATAAATCGAAGACGAGCGATAAGAATGCTGAACCCAGTGAGGTGTTATGGATAGG GTTCCCTTCTATATTGAAAGTAGATGAATTGGTCCTAAGGAAAGCGTTCTCGCCATATGGTGAGATAGAGAAGATTTCTGTATTCCCTGGTCGTAGTTAT GCATTTGTCAGGTTTAGGGTTTTGGAATCAGCTTGCAGGGCAAAAGAATCTCTCCAGGGAAAGCTATTTGGGAATCCTCGAGTTCATATTTGTTTTGCAA GGAATGATGGCGGTCCATCCAATGACAGAAGGTCCCCTCTCTCCCCCGAATATAAGTCAAGTGTGCGTCCTGGAGCTTATGAGGGTTCTCGTCGAGACAG AGATTCCAGCATTAGATCTCCTCGTTTCGGTGCAAAAGTGGACGGTGGAGATTCTGATGCCTATGACTTTGATAGGGACAGCTACTTGTATCCAGGTGGG AAGAGATATGAAAACTTGAGGTTTGAAGAGGAGCTAGGACCACCACCGGATGTATATGAAAGGCGTGGAAGCCCTGTAAGAGACAGGGGAGCTCATTTCT TCGAAGCTGATCAGAGAATATCTCGTAAGAGTTCATTGTACGAGGAACCGTGGGATTTACCTGAAGATGGGGATTCTTTCCGTGGAACCAAGAAGCTTAA GACTGGATATTTCCCACCAGACAGAGAGCTTCCAGAGTTTCCTTTCTCCGATATGGAGCGAGGAGATAGACGCGGGTTTCCTAGGGGTTACTCTGATTTT CCTCAGTCTGAAGCTTTCGGGAAGAATTCTACTGGCTATATGCCAACTCCTGAGCGCTCGAGCGTGAACTTGGCTATCACCCGTGGAGACAGAAGTGATC GGTTGAGAGGATCTTCTTATGACGGTTTCCAGCAAGGCCCTGATACTATGTTGTCAAATCCTGTAGAGAGGAAAGGATTTGGTTCTGAACCAGCACCACC TCCATCCTTGAAACTATGGCAATGGGAAGGAACTATCGCAAAGTCTGGTAGTCCTGTGTGTCAAGCTCGGGCCTTTCCTGTCGGGAAATCTATGGAAATC ATGCTGCCTGAATTCTTGGATTGTACGGCTAGAACGAATCTGGACATGCTTGCTAAACACTACTACCAGGCTGCTTCTGCTTGGGTTGTTTTCTTCGTTC CAGCGAGTGATGCTGATATAGAACACTACAATGAATTCATGCACTATCTAGGCGAAAAACAGCGGGCAGCAGTGGCTAAATTGGATGATAAAACCACTTT GTTTCTCGTGGCGCCGTCTGAATTTTCGGAGAAAGTATTGAAAGTCCCGGGAAATATGAGTATATCTGGTGTAGTTCTCAGACTAGAGTCTCTTGGTCCT AGTTCTGCTCCGCGCAACCATCCAATTGACAACCGGGAAGCAAACTTGCGTTACAAGGCAGCTTTGCCGGATTTCACGCGATCAGGTGGTGGCGATCCAT CTTCTTTTCCCGCCCACTTGCCGGCTTTAGCTGGAATTTCAGGTTCAGTCCACCCTCACGGGACCATGTCCGATCCCTACAGTGATACCAGAAATGATTA TCCTCCTCAGCCGCGAAATCACGGGTTGGGAAACAGAATTGTGCCATCATCACATGGATCGGGTAATGCAAACGATCTGGTTTACCATGAACGTAGCCAC TTGGTAATGCCGGGACCAACCGGACCAGATAATAATAGCTCTGCTCATTATGGTGGTGGAACATCGAACCATCAGGACCAGAGAATGTCTGTTCAGGAAC CGGCTCCGGCGGCATCTCTCGCTGCCACCGGATTGCAACCGCAGCAACTAGCACAGTTGTTATCTTCGCTTGTTGGGCAACAGGGTGGCCGGGGCCAAGT GGCAAGCAGCAATCCGAATGCATCAACGGTGGAAGATTATCGGCAGGCTGCTGGTGTACAACAACAGGGTTTCCAGAACAACAACCAGCATCAGCAGAAT TATGATACTTCAGCAACTCACTACGGTCAGCTGCAGCAGTTACAGCATCAAAGTGCAAATGTCATGACAACCATGAACAGTAGGGAGCCGCAGCTAGGGG CTCCGTCGGCTCAACAAGATGGGGAAGGAGGCGTTAAAAGGCTAGAAGCGACGTTGGAACTGGCAGCAACTCTTCTTAAGCAGTTACAGCAAGGGAAAGG GCCATAG
AA sequence Show only first row Show all	>Lus10025188 pacid=23167798 polypeptide=Lus10025188 locus=Lus10025188.g ID=Lus10025188.BGIv1.0 annot-version=v1.0 MNIRGGGGRERLRRDPPPSRSDDGGGGRRPSRHLWVGNLSQNIQEQDLTRHFLEFGELESVAFQPGRHFAFVNFKNDEDGIAALKVLQGFPVDGNPLKIE FVKVDKPSAQSRDEDYRQRRDQRPAPRESPFSHRDSKVHAGSPDAYYPDKSKTSDKNAEPSEVLWIGFPSILKVDELVLRKAFSPYGEIEKISVFPGRSY AFVRFRVLESACRAKESLQGKLFGNPRVHICFARNDGGPSNDRRSPLSPEYKSSVRPGAYEGSRRDRDSSIRSPRFGAKVDGGDSDAYDFDRDSYLYPGG KRYENLRFEEELGPPPDVYERRGSPVRDRGAHFFEADQRISRKSSLYEEPWDLPEDGDSFRGTKKLKTGYFPPDRELPEFPFSDMERGDRRGFPRGYSDF PQSEAFGKNSTGYMPTPERSSVNLAITRGDRSDRLRGSSYDGFQQGPDTMLSNPVERKGFGSEPAPPPSLKLWQWEGTIAKSGSPVCQARAFPVGKSMEI MLPEFLDCTARTNLDMLAKHYYQAASAWVVFFVPASDADIEHYNEFMHYLGEKQRAAVAKLDDKTTLFLVAPSEFSEKVLKVPGNMSISGVVLRLESLGP SSAPRNHPIDNREANLRYKAALPDFTRSGGGDPSSFPAHLPALAGISGSVHPHGTMSDPYSDTRNDYPPQPRNHGLGNRIVPSSHGSGNANDLVYHERSH LVMPGPTGPDNNSSAHYGGGTSNHQDQRMSVQEPAPAASLAATGLQPQQLAQLLSSLVGQQGGRGQVASSNPNASTVEDYRQAAGVQQQGFQNNNQHQQN YDTSATHYGQLQQLQHQSANVMTTMNSREPQLGAPSAQQDGEGGVKRLEATLELAATLLKQLQQGKGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	0	1
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	1.4	0.8226
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	3.2	0.8187
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	8.9	0.7949
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	13.0	0.7939
AT3G16310			mitotic phosphoprotein N' end ...		Lus10037573 [exp]	15.2	0.7867
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	17.5	0.7428
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10001302 [exp]	20.5	0.7506
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	23.2	0.8104
AT5G53440			unknown protein		Lus10019025 [exp]	28.5	0.7326
AT5G53440			unknown protein		Lus10005006 [exp]	29.4	0.7279

Compare expression of checked genes

Lus10025188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.