Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48310 1217 / 0 unknown protein AT4G24610 749 / 0 unknown protein AT5G65440 635 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016071 [exp] 2022 / 0 AT5G48310 1328 / 0.0 unknown protein Lus10000766 [exp] 777 / 0 AT4G24610 1499 / 0.0 unknown protein Lus10015962 [exp] 766 / 0 AT4G24610 1476 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172000 [exp] 1460 / 0 AT5G48310 1350 / 0.0 unknown protein Potri.002G104100 [exp] 786 / 0 AT4G24610 1508 / 0.0 unknown protein Potri.004G118950 [exp] 41 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025189 pacid=23167858 polypeptide=Lus10025189 locus=Lus10025189.g ID=Lus10025189.BGIv1.0 annot-version=v1.0 ATGACAGCGGACGAGCAAGATGCCAGCGAGAGCGTCGGTTCGGTGTCAGATTACACCGCCGGAAATTTCTCCGTGTACGGCGGCGAGGAGGAAGAGGAGG AGGGGGAGGAAGTAGGTAGCGTAGCTGACGTGGACTACTTGGAGAAGTCCGGGAGGCAGTGCTATGATGATGCAGACATAGTGTTTGTTGGAAGGCCTAA GAGAAAACTGAACCGAGGGTTGTTGAAGGAGGATTTGAAAATCGAAGTGCCTGGTTGTAGTGGTGTTGGTGGTGGACTGAGAAGGTTTACGACAGATGGA GAATTGGGAGCCAGGAGACTTGCTGATTTCCACGGTTCAAACTCTAGTGGTAATTACTCTCTTCGGGAGAGAGTTCAGCTACAGAACTCGCGTTTCGCCT CTAATTTGGAGGATTTTGGAACTCCAAGCGCACCTCCTGTTATGGACGTAGGAAGAGAAGAGAGTAGTATCGGATTTGAAACTCCGGGCCAAGGTGGGGA TGGGGTATGCGAGTTTGGAGAGTCGGGGAATCGTCATGGAGGAGGGGATTGCCCGCTGGATCCAACATTGCATTCTGTTCAAAGCAAAGAATTTACTGAA ACGGGAGTGAAGGCGACAGTGACAGATCAAATGGAAGAAAAGATGCCTTATTGGCAGACAAGTTCCTTGGACCAATCATACACAAGGCAATATGGCAGCG GCCAACATGCTTGGCAAACTCTCATAGCATATGATGCTTGTATCCGTTTATGTCTATACTCATGGGCTAAAGGGTGCACTGAGGCTCCTGAATTCATGCG GGATGAGTGTTTGCTTCTCCGAAGTGCTTTTGGACTGCACAATTTTTTGTTACAGCCGCGAAATGTACAGGCGACAGAAGTGAGGACTACCAAAAATGCA GACCAAGTGGGTTCTGCAAAAGTTAAGAAGGTTGTAGGGAAGATAAGAGTGGAAGTAAGGAAGCTTCGAGTTGTTCCAAGAAGAAAACTCAAGAGTATTA ATTCAATGCGGAGTGCAGTATACATGCAAGTGGGGAAAGATTATGTGAAACAAGTGTCATCTCTTGTGAAAAACGGCATGAATTCTCTTAAGCTTGCTTC ATTTCCAGCGAATTCAGAAGAGCAACTGTCATGCTTTTTTCAATTAAAGAGCGCTTCTGAAGACGCTGAAATTGAACCTGCTTCCACAATATGCTTGCAC CCTGGAACTGGGGAGTACCATGTCTTTTTTCCGGAGAGTGAAGGAGATGCTCTATTGGTAGAGGTTCAAGATAACAAAAAATCACTCGAAGGTCGAGCCA TAATTCCAATTTCATCACTGAATGAAAACTCGAACGACAGAATTAGATGGTGGCCTCTGTACCATGAAGGCCAAGAATGTGTTGGGAAAGTGCAGCTCTA CATTGGCAGCAGCACAATTGCCTGTGACGAGACTAATAACATAAAGAGTGGACCTGTTGCGGAGACCCTGGCTTATGACTTGTTGCTGGAGGCTTCCATG CGCTCCCAACATTTTCATGCTCGAAATTTGAAGTTACATGGACCTTGGAAGTGGCTCCTGACCGAATTTGCAGAATATTATGGAGTATCTGATTCATATA CAAAGCTGAGGTATCTTTCACATGTCATGAATGTAGCTACTCCTACTAAGGATTGCTTGGAGCTTGTGAACGAGTTGCTGATACCCATTTTAAAGGCTAG AAGTGAAAAGAATTTGACGAGACAAGAGAAAAGTATATTGCTAGACTGCGAAATGCAAATTGAAAAGCTATTGGCAAATGTTTTCGAGAACTACAACTCA CTCGATGAGTCATCTCCTACTGGATTGGCCGACTTATTTGGTCCTGTACAAGAGTCCGCTGCACCTGCTTTAAGTCCTGCTGTTAATGTCTACACTCTTC TTCATGATATACTGTCTCAAGATGCACAAACTATGTTGAAGAATTACTTACAGACTGCAGCTAAGAAAAGGTGTCGCAAGCACATGATTGAGACTGATGA ATTCGTGTCATGCAACGCGGAAGGTTTCCTCATGGACTCCATAACTGTGTCAACTGCTTATTTGAAAATGAAGAATCTGTGCATGAACATTAGCAAAGAA ATACAGGCAGACATCAAAATCCACAATCAGAACATATTCCCCAGCTCCATTGACCTATCAAATATCTCAGCTGCTGTTTACAGCACTGAACTGTGTGAAA GGATTAGACGTTTTCTGTCTGCTTGGCCTCCGAGCAGCCCGCATCCACATGTTAATGAGCTTCTGACAGCGATTTCCGACTTTGAGAGGGACCTTGGTTT ATGGAAAATCAGCTACATAATCGTGTGGGTGCAAGATATGGAACTGAACTTGCTTGAGCTTTGTAAAGCAGAGAAGGTACCATGGGCTGGGGTAACCACT AATCATTCCACATCTCCATTTGCTGAAGAGATGTATGAGAAAATGAAGGAGTCTCTAATTGGCTACGAAGTGGTGGTCAATAGATGGCCTCAGTATTCAC TGATCCTTGAAACTGCTGCTGCTAATATAGAACGAGCAATCATTAAAGCATTGGAGAAGCAACACAATGACATCTTGACTCCATTGAAAGACAGCATTCC CAAGAGGCTAAATCTGCAAGTTCAGAAGCTAACAAGGAGACAATCCATGGCCCCTTACTCTGTACCAAATCAACTGGGAACGTTTGTGAACACGATCAAG CGAATTGTAGATGTCTTGCATTGTAGAATAGAGGAGATATTGAGATCATGGGCATCTTGTCTGCCCGTGGTGGGAGATAAAAGATCAACTTTTGGGGAAC AGATGAATGGAATCACAGTTTTGCTCAAAACCAAGTACAAAAATTACTTGCAGGCCACGGTGGAAAAGCTTGTGAACAACATAAAAGAAGAGGATGGAGA GGCTGATGTCCGCGAAAGAATGCAAATGCTGAGCTCACAGCTCATTGACTCCATATCGAATCTTCATGGTGTCTTTTCCAGTCGGATATTTGTTGCAGCA TCTCGTGGATTATGGGATAGAATGGGACAGATGGTACTCAAGTTTCTGGAAGGCAGAAAGGAGAACAGAGTATGGTACAATGGCTCTTGCTATGCACTTG GGATACTGGACGACATATTTGCTTCACAGATGCAGAGGCTTCTAGGGAATGCAATTCAAGAAAAGGATATAGAAACGCCTCGATCGGTGATTGAAGCCAG ATCCATTCTCTGCTGA
AA sequence Show only first row Show all	>Lus10025189 pacid=23167858 polypeptide=Lus10025189 locus=Lus10025189.g ID=Lus10025189.BGIv1.0 annot-version=v1.0 MTADEQDASESVGSVSDYTAGNFSVYGGEEEEEEGEEVGSVADVDYLEKSGRQCYDDADIVFVGRPKRKLNRGLLKEDLKIEVPGCSGVGGGLRRFTTDG ELGARRLADFHGSNSSGNYSLRERVQLQNSRFASNLEDFGTPSAPPVMDVGREESSIGFETPGQGGDGVCEFGESGNRHGGGDCPLDPTLHSVQSKEFTE TGVKATVTDQMEEKMPYWQTSSLDQSYTRQYGSGQHAWQTLIAYDACIRLCLYSWAKGCTEAPEFMRDECLLLRSAFGLHNFLLQPRNVQATEVRTTKNA DQVGSAKVKKVVGKIRVEVRKLRVVPRRKLKSINSMRSAVYMQVGKDYVKQVSSLVKNGMNSLKLASFPANSEEQLSCFFQLKSASEDAEIEPASTICLH PGTGEYHVFFPESEGDALLVEVQDNKKSLEGRAIIPISSLNENSNDRIRWWPLYHEGQECVGKVQLYIGSSTIACDETNNIKSGPVAETLAYDLLLEASM RSQHFHARNLKLHGPWKWLLTEFAEYYGVSDSYTKLRYLSHVMNVATPTKDCLELVNELLIPILKARSEKNLTRQEKSILLDCEMQIEKLLANVFENYNS LDESSPTGLADLFGPVQESAAPALSPAVNVYTLLHDILSQDAQTMLKNYLQTAAKKRCRKHMIETDEFVSCNAEGFLMDSITVSTAYLKMKNLCMNISKE IQADIKIHNQNIFPSSIDLSNISAAVYSTELCERIRRFLSAWPPSSPHPHVNELLTAISDFERDLGLWKISYIIVWVQDMELNLLELCKAEKVPWAGVTT NHSTSPFAEEMYEKMKESLIGYEVVVNRWPQYSLILETAAANIERAIIKALEKQHNDILTPLKDSIPKRLNLQVQKLTRRQSMAPYSVPNQLGTFVNTIK RIVDVLHCRIEEILRSWASCLPVVGDKRSTFGEQMNGITVLLKTKYKNYLQATVEKLVNNIKEEDGEADVRERMQMLSSQLIDSISNLHGVFSSRIFVAA SRGLWDRMGQMVLKFLEGRKENRVWYNGSCYALGILDDIFASQMQRLLGNAIQEKDIETPRSVIEARSILC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48310			unknown protein		Lus10025189 [exp]	0	1
AT5G48310			unknown protein		Lus10016071 [exp]	1.0	0.9916
AT2G22610			Di-glucose binding protein wit...		Lus10025708 [exp]	1.4	0.9837
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	1.7	0.9813
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10018341 [exp]	3.5	0.9720
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	3.9	0.9700
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039167 [exp]	7.5	0.9643
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	8.1	0.9677
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	8.1	0.9514
AT1G59540		ZCF125	P-loop containing nucleoside t...		Lus10007725 [exp]	8.5	0.9633
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	8.9	0.9567

Compare expression of checked genes

Lus10025189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.