Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23060 545 / 0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT4G37580 542 / 0 UNS2, COP3, HLS1 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G67430 428 / 4e-149 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G30090 281 / 2e-91 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002468 [exp] 734 / 0 AT2G23060 589 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10026088 [exp] 322 / 8e-107 AT2G23060 369 / 1e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10002314 [exp] 316 / 1e-105 AT4G37580 335 / 3e-113 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016904 [exp] 168 / 6e-48 AT4G37580 181 / 3e-53 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054200 [exp] 606 / 0 AT2G23060 597 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G146100 [exp] 578 / 0 AT2G23060 609 / 0.0 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G044100 [exp] 345 / 6e-116 AT4G37580 372 / 4e-127 UNUSUAL SUGAR RESPONSE 2, HOOKLESS 1, CONSTITUTIVE PHOTOMORPHOGENIC 3, Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.003G182500 [exp] 336 / 1e-112 AT2G23060 368 / 3e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.009G074200 [exp] 320 / 2e-106 AT2G30090 383 / 6e-132 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G279400 [exp] 309 / 2e-102 AT2G30090 374 / 2e-128 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.010G144700 [exp] 234 / 7e-73 AT2G23060 224 / 2e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10025191 pacid=23167851 polypeptide=Lus10025191 locus=Lus10025191.g ID=Lus10025191.BGIv1.0 annot-version=v1.0 ATGAGAGTCATGGTGGATGATGGAGTTGTAGCAGTAGAAGAAGAAGAGTTGGAAATAAGAGAATATGATCCGATAAAAGACGGACAAGGAGTTGAAGAAG TGGAGAGGAGATGTGAGGTTGGTCCCAGCGGTAAGACCTCTGTCTTCACCGACCTCCTTGGCGACCCTATTTGCAGGGTCCGCCACTCCCCTGCTTTCCT CATGCTGGTTGCTGAAATGGGAGATGTAATTGTGGGTATGATCCGAGGTTGCATTAAAACAGTCACATGCGGACAAAACCTCTCTAGATCAAATCTCAAC CCGACGACTGCACTCCCTGTATACACTAAAGCTGCTTATGTACTTGGTCTCCGGGTTTCCCCTTCTCACAGGCGGATGGGGATAGGCCTGAAACTTGTCC GGAGGCTTGAAGAATGGTTTCGCGAAAACGGCGTTGAGTATGCTTACATGGCTACTGAAAACGACAACCACGCCTCCATTGGTCTCTTTACCCATAAATG CGGCTACTCCAAGTTCCGCACTCCTTCCATCCTCGTCAACCCGGTTTACGCCCATACCGTACCCATCTCCAACCGGGTTTCCATCCTCCGACTCTCTACC CTCGACGCAGAAAAGCTGTACCGTCGTCGTTTTGCCACCACCGAGTTCTTCCCCCGCGACATCGATTCGGTTTTGAATAACAAACTTAACCTTGGAACAT TTCTTGCGCTGCCACGTGGATGGGGCAGTGACGGCGGCGGCGGAAACAACGATGGGTCCCGGTTTCGTTGGCCTGGGGTGGATAAGTTCCTATCCGACCC TCCAGAGTCATGGGCCGTGACTAGCCTGTGGAACTGCAAGGACGTGTTCACGCTTGAGGTGCGTGGCGTGTCGCGCGTGAAGAAAGCATTTGCCCTGGCT ACGAGGGCGGTTGACAGGGCGCTGCCGTTTTTGAGGCTTCCGTCAGTTCCGGAGCTTTTTAGGCCTTTCGGTTTCCACTTTATGTACGGACTTGGCGGGG AAGGGCCACGCGCAGGGAAAATGATGAAAGCTCTGTGTGGGCACGCGCACAACCTGGCCAAAGCAGGTGGGGGTAGGGTGGTGGTGACGGAGGTGTCGAA TCAGGAGCCGCTGAGGTTAGAGATCCCGCACTGGAAGATGCTATCGTGCGCTGAAGATTTGTGGTGTATTAAGCGGCTCGGGGAAGATTATAGTGACGGC TCTGTTGGTGACTGGATAAAATCACCACCTGGGTTGTCCATTTTTGTTGACCCTAGGGAGATCTAA
AA sequence Show only first row Show all	>Lus10025191 pacid=23167851 polypeptide=Lus10025191 locus=Lus10025191.g ID=Lus10025191.BGIv1.0 annot-version=v1.0 MRVMVDDGVVAVEEEELEIREYDPIKDGQGVEEVERRCEVGPSGKTSVFTDLLGDPICRVRHSPAFLMLVAEMGDVIVGMIRGCIKTVTCGQNLSRSNLN PTTALPVYTKAAYVLGLRVSPSHRRMGIGLKLVRRLEEWFRENGVEYAYMATENDNHASIGLFTHKCGYSKFRTPSILVNPVYAHTVPISNRVSILRLST LDAEKLYRRRFATTEFFPRDIDSVLNNKLNLGTFLALPRGWGSDGGGGNNDGSRFRWPGVDKFLSDPPESWAVTSLWNCKDVFTLEVRGVSRVKKAFALA TRAVDRALPFLRLPSVPELFRPFGFHFMYGLGGEGPRAGKMMKALCGHAHNLAKAGGGRVVVTEVSNQEPLRLEIPHWKMLSCAEDLWCIKRLGEDYSDG SVGDWIKSPPGLSIFVDPREI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10025191 [exp]	0	1
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10019828 [exp]	27.3	0.7447
					Lus10004020 [exp]	32.9	0.6843
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	34.4	0.7264
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	42.1	0.7095
AT5G43060			Granulin repeat cysteine prote...		Lus10019827 [exp]	48.0	0.7368
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	51.6	0.7140
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	72.9	0.7002
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	77.3	0.6585
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10034544 [exp]	85.0	0.6726
AT5G43180			Protein of unknown function, D...		Lus10025134 [exp]	90.5	0.6695

Compare expression of checked genes

Lus10025191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.