Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14820 248 / 2e-77 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 234 / 1e-72 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 206 / 2e-62 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 198 / 8e-60 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT1G67900 187 / 2e-54 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 170 / 2e-48 Phototropic-responsive NPH3 family protein (.1) AT5G13600 155 / 6e-43 Phototropic-responsive NPH3 family protein (.1) AT5G64330 154 / 4e-42 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT4G31820 151 / 2e-41 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G30440 150 / 5e-41 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011525 [exp] 276 / 8e-89 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 269 / 1e-85 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 264 / 3e-84 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 260 / 3e-82 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 183 / 6e-53 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10009292 [exp] 165 / 2e-46 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 164 / 6e-46 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 164 / 8e-46 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 161 / 1e-44 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146400 [exp] 356 / 2e-119 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 297 / 9e-97 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 295 / 8e-96 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 192 / 2e-56 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 187 / 1e-54 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.018G018600 [exp] 181 / 3e-52 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 171 / 1e-48 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 167 / 4e-47 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 164 / 5e-46 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.010G223600 [exp] 160 / 1e-44 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10025192 pacid=23167837 polypeptide=Lus10025192 locus=Lus10025192.g ID=Lus10025192.BGIv1.0 annot-version=v1.0 ATGTTAGTTTGTGGAGATAGAGCAAGGGATAAACTGATAACAAGAATCAGCCAACAACTGGAAGAGGCTACCATTCCTGATCTTTTCATTCCACCCCAAT GTGGGGAAAGAGCCGTATTTGATGTCACCATAATACAAACACTAGTTGAGGAATTTGTGAAAGAGCAAGAAATTTTGTCTCGGGGCTCAAAGTTTGGTTC AGATGCACCTAAAGTACATGTAGCAAAGTTGGTTGAGGGTTATCTTGCTGAAATATCTCGAGACCTCGACCTGCCCTTATCAAAGTTCCTTGGTCTAGCT GAAATGGTGTCCAGTTTCCCAAGGCCATCCCATGATGGAGTATACCGAGCCATTGATATGTACCTTAAGGAACATCCTGGGATTAGTAAGAGCGAAAAGA AGAGAATATGCAAGCTGATGGACTGCAAGAAACTGTCAGTGGAAGCAAGTATGCATGCTGTTCAAAATGAAAGGCTTCCATTGCGAGTTGTAGTACAGGT TCTTTTCTTTGAGCAGATGAGGCAGTCATTATCGCCTGGAGGCAGTAGTACACCAGAGCTACCTAGCTCCATTAGGGCCTCAATTCCTGGCAAGTTTCAT GGAAGCTCGAGGTCCACTACAAGCAACACCGAGGAGGATTGGGACTCGGTGCCAACTGCCGATGATAGAAGGAGTCTGAAAGGCGAGCTAGCTACACTAC GATTGGGAAGTACTAATGGCAGTGGTAGAAGCCAAAATGATGTTAGTGCCAGAACAGATGCTGCTGAGAAAGCTGCTGCAAACAAAATGAAAGGTTTGGT GATGTCAAGGATGTTCTCAAAGTTATGGTCAAGCAAAGAACGGATAGGAGAGATTAGGAGCTCTGACACATCGGAGAGTCGAGGATCGAGCTCGGTAGAA GAGGCAAAGTAG
AA sequence Show only first row Show all	>Lus10025192 pacid=23167837 polypeptide=Lus10025192 locus=Lus10025192.g ID=Lus10025192.BGIv1.0 annot-version=v1.0 MLVCGDRARDKLITRISQQLEEATIPDLFIPPQCGERAVFDVTIIQTLVEEFVKEQEILSRGSKFGSDAPKVHVAKLVEGYLAEISRDLDLPLSKFLGLA EMVSSFPRPSHDGVYRAIDMYLKEHPGISKSEKKRICKLMDCKKLSVEASMHAVQNERLPLRVVVQVLFFEQMRQSLSPGGSSTPELPSSIRASIPGKFH GSSRSTTSNTEEDWDSVPTADDRRSLKGELATLRLGSTNGSGRSQNDVSARTDAAEKAAANKMKGLVMSRMFSKLWSSKERIGEIRSSDTSESRGSSSVE EAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10025192 [exp]	0	1
AT2G18100			Protein of unknown function (D...		Lus10033916 [exp]	4.0	0.8524
					Lus10003443 [exp]	8.0	0.7719
AT4G31880			unknown protein		Lus10026078 [exp]	19.6	0.7428
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10004965 [exp]	23.2	0.7400
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	28.6	0.7369
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10034371 [exp]	31.8	0.7337
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10037040 [exp]	34.4	0.7333
AT3G20190			Leucine-rich repeat protein ki...		Lus10035709 [exp]	36.8	0.7326
					Lus10011636 [exp]	39.0	0.7326
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	41.1	0.7326

Compare expression of checked genes

Lus10025192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.