Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67470 671 / 0 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G25500 505 / 2e-163 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 458 / 3e-147 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G05470 395 / 3e-123 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 381 / 7e-118 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 337 / 5e-103 AFH3 formin 3 (.1.2) AT1G70140 309 / 2e-92 ATFH8 formin 8 (.1) AT5G48360 306 / 3e-91 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G59910 287 / 6e-83 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G07540 258 / 3e-73 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011524 [exp] 782 / 0 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 768 / 0 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10008739 [exp] 508 / 3e-164 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 503 / 5e-162 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10004505 [exp] 404 / 3e-127 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 389 / 1e-121 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 387 / 6e-121 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 386 / 7e-121 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 389 / 1e-120 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G054900 [exp] 885 / 0 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 522 / 4e-171 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 521 / 9e-171 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 519 / 4e-168 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 511 / 4e-165 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 406 / 6e-127 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 393 / 8e-122 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 389 / 5e-120 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 382 / 7e-118 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 378 / 4e-117 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10025195 pacid=23167787 polypeptide=Lus10025195 locus=Lus10025195.g ID=Lus10025195.BGIv1.0 annot-version=v1.0 ATGACCTCCCAGTGGCTTCTCATTTCTTTCCTTCTTCACTTTCTGTTTCCATCTCCCCTATTCAATTCCGCAACTCCCGATTATGGTGAAAGCCCTCGCA GAATTCTCCACCAGCCATTGTTTCCAGCTGTACCTGAGGATCCACCTCCCTCACAACCCCCGCCCTCGCCGTCGGCTGATTCATCCAATTTCCCCGACCC GGACCAACCCTTCTTCCCACCAGATCAACCCCAAACACTAACCCCACCCGTTACCTCCGCCAATGCCTCCGTTCCTATCCCCACCGCCACCCAGGGGCAG CCAGTTAAGCGGAATACCAAATTGACTATTGCAGTCTCTGTTGGGATCGTCACTCTTGGAATGCTCTCTGCCCTTGCATTCTTCCTTTATCGTCACCGCC TCAAGCACTCTCCCCGGGGAGACTCAGACAAGCTCTTCGGAGATGGAAACTCCCGTCAATTTGTTGATCCACCGCCGCCGCCGCCTGCGCAGTCGAATTT TTTGTATATTGGGACGGTTGAGCCGAGCAGGAGCTCCACTTCCGAATTGACCGTAAACAACTCGTCTCCCTACCATAAGTTGAACTCGGTCAAGAGATCT GACCGTTATCGACCTAGCCCTGAGTTGCAGCCGCTACCACCATTGCCGAAAGCTCCTGCGATTTCTGCTGCTTCTATTCTTCATCCTCGTCTTCCACCTG TTCCTGTCACACCTCCTACGCGGCCAGAGTACGAGAGCTCCGCCGCATCTCCCACGTCCTCGTTGTCAGACAAAGAAAGCCACGGGACGCCGTTTTACAC GCCCGGGGGATCCGTGTTGAGCAATAACGACGGATATTACACTCCGGTTTCAAGAAATAATAGTAATAACATCAACGGCGGAAGCTCTGTTAAGTCCATT AACGGGAATAATGGCTCTTCTAGCCCTCAATCCAAGAGAACCTCTCCCAAATCAAGATTTTCTTCCTCTGTATGTTCTCCTGAAATGAAGCATGTGATTA TCCCTTCCATTAAGAAGCCGAATCCTCCGCGTCCGCTTCGTGATGGCAGAATTGAAGACGATGAGCCGCCAATAAGTTCCTATCTATCCAAAAGGCCGAA ATTCGCGGCGGCACCGCCCCCGCCCAATATGGCACTTCTTCGATCGTTAAACGACTGTCCGCCGAGTAAACCTACCGCTCCTCCGCCGCCGCCGCCTCCT CCGCCGCCGCCGGGTACGATTCCAACACCCGGAAAGGTAAGAGGATCTCTATCTGTAGAGAAAGCAACAGTGGAGCATCAGTCGTGGACTCGGAGTACTA AGACCAGTTCGATGATTGATACGCCGAAATCATCGGAGCAGAGTAGCAGAAACGGAGGAGGAGAATCTTCCTCTGGCAAGACTGACGGAGACGAGAATGA TGGCACGAAGCCCAAATTGAAGCCTCTCCATTGGGACAAAGTTCGAGCAACCTCAGACCACGCCACAGTGTGGGACCAGCTGAAATCTAGTTCATTCCAA ATAAATGAGGACATGATGGAGAGTCTGTTTGGCTGCAATTCGGGCAACAGAGAAGCCACAAGGAAACCAGATGTGCCTCGAATTGAACAAGAAAACAGAG TTTTGGATCCGAAGAAGTCCCAGAACATAGCGATTTTGTTGAGAGCATTGAATGTGACGAAAGATGAAGTCTCCGAAGCTCTTACGGATGGGAATCCAGA AGGATTGGGTGCTGAACTTTTAGAAACCCTGGTGAAGATGGCTCCAACAAAGGAGGAAGAAATAAAACTTCGAGACTATGTCGGTGATACCTCCAAACTA GGAACTGCAGAGAGATTCCTCAAGGCGGTTCTTGACATCCCATTTGCCTTCAGAAGAGTGGAAGCCATGCTATATAGAGCCAATTTTGACACTGAAGTTA CATACCTTAGAAGATGTTTTCAAACGCTAGAGGTAGCAAGTGAAGAACTGAAGAAGAGCCGATTGTTTCTCAAGCTCCTAGAAGCTGTTCTCAGGGCAGG GAATCGTATGAATGTTGGCACAAATCGTGGTGATGCTAAAGCTTTTAAGCTCGACACACTATTAAAACTGGTGGATATAAAAGGAACTGATGGAAAGACG ACATTGCTCCACTTTGTAGTTCAGGAAATTATTAGATCGGAAGGTACTACAGGTTGTCTCCCAGAAGAGAAAGTTGTGGAGAACAAAGTATCAAAGACGA AAGACGAAGACAACTTCAGGAAGCAAGGATTGTTGGTTGTGTCTGGATTAGGTAGGGACCTTTGCAATGTGAAAAAAGCAGCAGGGATGGACTCTGATGT TTTAAGTAGCTATATGACGAAGCTTGAGATGGGGCTTGACAAAGTGAGGTTAGTTTTCCAGTACGAGAGACCCAATACACAGGAAAAGTTCTTCCACTCA ATGAAGCTGTTTCTCAGAGACGCTCAAGAAGAGATATCCAAAATCAAAACTGCTGAAAGAAAAGTTCAGTCTCTGGTGAAAGAGGTGACAGGATATTTCC ACGGAGATACAGCAAAAGAGGAAGCCCACCCTTTCAGAATATTCATGATTGTGAGAGACTTCTTATCTATATTGGATCATGTGTGCAAGGAAGTGGGACA GATGCAGGACAGGACAGTGGTGGGTTCTGCAAGATCCTTTGGAATAGCTCCAAATGCTTCAACTCCGGTTCTGAACAGATACAGTGCAAGAAAGGATCAT ACGAGCACTGACGAAGATAGTTTGTCCCCTTGA
AA sequence Show only first row Show all	>Lus10025195 pacid=23167787 polypeptide=Lus10025195 locus=Lus10025195.g ID=Lus10025195.BGIv1.0 annot-version=v1.0 MTSQWLLISFLLHFLFPSPLFNSATPDYGESPRRILHQPLFPAVPEDPPPSQPPPSPSADSSNFPDPDQPFFPPDQPQTLTPPVTSANASVPIPTATQGQ PVKRNTKLTIAVSVGIVTLGMLSALAFFLYRHRLKHSPRGDSDKLFGDGNSRQFVDPPPPPPAQSNFLYIGTVEPSRSSTSELTVNNSSPYHKLNSVKRS DRYRPSPELQPLPPLPKAPAISAASILHPRLPPVPVTPPTRPEYESSAASPTSSLSDKESHGTPFYTPGGSVLSNNDGYYTPVSRNNSNNINGGSSVKSI NGNNGSSSPQSKRTSPKSRFSSSVCSPEMKHVIIPSIKKPNPPRPLRDGRIEDDEPPISSYLSKRPKFAAAPPPPNMALLRSLNDCPPSKPTAPPPPPPP PPPPGTIPTPGKVRGSLSVEKATVEHQSWTRSTKTSSMIDTPKSSEQSSRNGGGESSSGKTDGDENDGTKPKLKPLHWDKVRATSDHATVWDQLKSSSFQ INEDMMESLFGCNSGNREATRKPDVPRIEQENRVLDPKKSQNIAILLRALNVTKDEVSEALTDGNPEGLGAELLETLVKMAPTKEEEIKLRDYVGDTSKL GTAERFLKAVLDIPFAFRRVEAMLYRANFDTEVTYLRRCFQTLEVASEELKKSRLFLKLLEAVLRAGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKT TLLHFVVQEIIRSEGTTGCLPEEKVVENKVSKTKDEDNFRKQGLLVVSGLGRDLCNVKKAAGMDSDVLSSYMTKLEMGLDKVRLVFQYERPNTQEKFFHS MKLFLRDAQEEISKIKTAERKVQSLVKEVTGYFHGDTAKEEAHPFRIFMIVRDFLSILDHVCKEVGQMQDRTVVGSARSFGIAPNASTPVLNRYSARKDH TSTDEDSLSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	0	1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10027657 [exp]	2.2	0.8313
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	2.4	0.8726
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	2.4	0.8497
AT5G26670			Pectinacetylesterase family pr...		Lus10010084 [exp]	3.5	0.8314
AT5G22930			Protein of unknown function (D...		Lus10016148 [exp]	5.0	0.7861
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	6.0	0.8376
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	9.9	0.8233
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	10.2	0.7808
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	11.4	0.8255
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	11.8	0.8179

Compare expression of checked genes

Lus10025195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.