Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67480 403 / 5e-140 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT4G37610 370 / 3e-127 BT5 BTB and TAZ domain protein 5 (.1) AT1G05690 306 / 7e-102 BT3 BTB and TAZ domain protein 3 (.1) AT5G63160 243 / 1e-77 BT1 BTB and TAZ domain protein 1 (.1) AT3G48360 240 / 4e-76 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT1G79000 66 / 2e-11 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 62 / 5e-10 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 55 / 6e-08 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1) AT4G08455 49 / 1e-06 BTB/POZ domain-containing protein (.1) AT4G04090 49 / 2e-06 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019299 [exp] 498 / 3e-177 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10011523 [exp] 488 / 5e-173 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10042082 [exp] 252 / 7e-81 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 246 / 1e-78 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10018087 [exp] 246 / 1e-78 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 110 / 2e-28 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10033321 [exp] 67 / 1e-11 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10034780 [exp] 67 / 1e-11 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 64 / 9e-11 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G055100 [exp] 413 / 2e-143 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.017G009700 [exp] 362 / 3e-123 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G140400 [exp] 353 / 1e-119 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.012G091400 [exp] 262 / 9e-85 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.015G087700 [exp] 261 / 1e-84 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.014G000500 [exp] 66 / 2e-11 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 66 / 2e-11 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.001G468700 [exp] 59 / 1e-09 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 54 / 8e-08 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.005G178400 [exp] 45 / 7e-05 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10025196 pacid=23167855 polypeptide=Lus10025196 locus=Lus10025196.g ID=Lus10025196.BGIv1.0 annot-version=v1.0 ATGGTCCAATTGATTACTGATGATGAACCATACCAAGCGGTGGAAAAATCCTATCCGGATCCACCTCCATTTCCCGATCCGCTGAAAAGCAAGTCCAAAA CTAGTCATCTATTGTCAGCAAGCCGTGTATCTGTTTGTAGAGCAACTAGGGATATATGGGAGCGACTGTTCAATGAGGGATACAAATCAGATGTCCAAAT CATTACCAGCAGTGGCCTTCCCATCTTCGCTCATTCCAACATCCTCGGAATGGCTTCTCCAGTGCTGAGAGAGATGTTAAAGCAGACCAAAATGCGTGAT GGCCAACGATTGATCTCCGTTAATGGTGTCCCCCACGACGCTGTTCGTGTATTCATCAGATTCCTCTACTCTTCCTGTTACGAGAAGGAAGAGATGGAGG AATACGTGCTTCATTTAATGGTACTTGCCCATGTGTTCGTGGTGCCAGACTTGAAGGAAATATGCATACACAGCGTAGAAATCGGATTTCTCACGATGGA GAACGTGGTTGATATTTTACAACTTGCACTATTGTGCGACGCTCCCAGGCTCAACCTTGTTTGCCATAGGATGATCATAACGAACTTTAGAGAAATATCG AGCACAGAAGGATGGAGAGCCATGAAGCAGAGCCATCCAGTATTGGAGACAGAGTTGTTGGAGGCCATGGTTGAAGCTGACAATAGGGAGAAAGAGAAGG TAAGAAGAAGGAAAGAGCGGGAGATGTATATGCAATTGTACGAGGCAATGGAGGCGTTGGTGCTTATATGTAGAAACGGGTGCATGACAGTTATTGGACC AAAAACCGACAATGAACTAGAGAGAAATCAACAACAACCATCCAGCTATGGAGGGGCATGTCGAGGACTTGAGCAGCTGGTCAGACATTTTTACGGGTGC AAGCAGAGAGTGGCGGTGGGTTGCAACCATTGTAAGAGAATGGGACAGCTGCTAGAGCTGCACTCTCGCCTCTGTGATGATTCTTCTATTTGTCGGGTTC CTTTGTGCAGGAATTTGAAGGAGAGGATGAGGAAGCAAGGTAAGAAAGATGAGAGTAGGTGGAGAATACTAGTGCAGAACATACTCAAGGCAAAAGCCAT TAGAGGATCCCCTTTCTTTTTGTCCAAGGCACCCTCTTCTTCTACTTCTTATAAATAG
AA sequence Show only first row Show all	>Lus10025196 pacid=23167855 polypeptide=Lus10025196 locus=Lus10025196.g ID=Lus10025196.BGIv1.0 annot-version=v1.0 MVQLITDDEPYQAVEKSYPDPPPFPDPLKSKSKTSHLLSASRVSVCRATRDIWERLFNEGYKSDVQIITSSGLPIFAHSNILGMASPVLREMLKQTKMRD GQRLISVNGVPHDAVRVFIRFLYSSCYEKEEMEEYVLHLMVLAHVFVVPDLKEICIHSVEIGFLTMENVVDILQLALLCDAPRLNLVCHRMIITNFREIS STEGWRAMKQSHPVLETELLEAMVEADNREKEKVRRRKEREMYMQLYEAMEALVLICRNGCMTVIGPKTDNELERNQQQPSSYGGACRGLEQLVRHFYGC KQRVAVGCNHCKRMGQLLELHSRLCDDSSICRVPLCRNLKERMRKQGKKDESRWRILVQNILKAKAIRGSPFFLSKAPSSSTSYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	0	1
					Lus10011367 [exp]	1.7	0.8105
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024620 [exp]	2.6	0.7640
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	3.0	0.8332
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	5.7	0.7556
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	6.7	0.7367
AT2G46640			unknown protein		Lus10005993 [exp]	7.7	0.8264
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	11.5	0.7957
					Lus10014735 [exp]	12.0	0.6710
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	14.1	0.7128
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	15.3	0.7741

Compare expression of checked genes

Lus10025196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.