Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49870 353 / 1e-126 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 350 / 3e-125 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT5G37680 323 / 1e-114 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49860 286 / 5e-100 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT2G24765 115 / 1e-32 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT1G10630 111 / 4e-31 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 110 / 1e-30 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 110 / 1e-30 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 110 / 1e-30 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 110 / 1e-30 ATARFA1B ADP-ribosylation factor A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 372 / 5e-134 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 372 / 1e-133 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 255 / 1e-88 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10014991 [exp] 110 / 1e-30 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 110 / 2e-30 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 110 / 3e-30 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 110 / 5e-30 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 109 / 4e-29 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10005749 [exp] 105 / 1e-28 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293100 [exp] 355 / 3e-127 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.009G087400 [exp] 354 / 6e-127 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.017G130500 [exp] 322 / 3e-114 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.004G086200 [exp] 320 / 4e-113 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.006G171500 [exp] 119 / 4e-34 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 117 / 1e-33 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 117 / 1e-33 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 114 / 2e-32 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.010G152600 [exp] 112 / 1e-31 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 112 / 1e-31 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10025201 pacid=23167808 polypeptide=Lus10025201 locus=Lus10025201.g ID=Lus10025201.BGIv1.0 annot-version=v1.0 ATGGGGGTGTGGGAAGCTTTTCTCAACTGGCTCCGCAGTCTCTTCTTCAAGCAGGAGATGGAGCTGTCCCTTATAGGACTTCAGAATGCTGGGAAGACTT CTCTTGTTAATGTGGTTGCCACCGGTGGATACAGCGAAGACATGATCCCAACGGTGGGGTTCAACATGAGGAAAGTAACAAAAGGCAATGTCACCATAAA GTTGTGGGATCTTGGAGGTCAACCTAGGTTCCGCAGTATGTGGGAGCGATATTGCCGGGCAGTTTCAGCTATTGTGTATGTGGTGGATGCTGCGGATCAT GACAACTTGAGCATATCGAGGAGTGAGCTTCACGACTTGCTGAGTAAACCATCACTTAGTGGCATCCCATTATTGGTACTTGGGAACAAGATTGACAAGG CAGGAGCTCTGTCTAACCAAGCTTTAACTGATGAAATGGGGCTGAAATCGATAACCGACAGAGAAGTTTGCTGCTTCATGATATCGTGCAAGAACTCTAC CAACATAGATTCTGTCATCGATTGGCTTGTAAAGCATTCAAAGTCGAAGAATTAG
AA sequence Show only first row Show all	>Lus10025201 pacid=23167808 polypeptide=Lus10025201 locus=Lus10025201.g ID=Lus10025201.BGIv1.0 annot-version=v1.0 MGVWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADH DNLSISRSELHDLLSKPSLSGIPLLVLGNKIDKAGALSNQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	0	1
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	2.2	0.8819
AT5G23395		MIA40	mitochondrial intermembrane sp...		Lus10001795 [exp]	2.4	0.8502
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	4.6	0.8498
AT4G38060			unknown protein		Lus10032845 [exp]	4.6	0.8598
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	5.5	0.8504
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	5.7	0.8463
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	5.8	0.8801
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	7.1	0.8334
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	8.1	0.8286
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	10.1	0.8241

Compare expression of checked genes

Lus10025201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.