Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67570 797 / 0 EMB246, DG1, EMB1408 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30610 390 / 1e-121 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G02860 121 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 99 / 9e-21 PGR3 proton gradient regulation 3 (.1) AT1G62670 96 / 3e-20 RPF2 rna processing factor 2 (.1) AT2G18940 96 / 5e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 91 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G17140 91 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 89 / 3e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 89 / 4e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012091 [exp] 1538 / 0 AT5G67570 805 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023384 [exp] 380 / 1e-118 AT1G30610 734 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10013894 [exp] 119 / 3e-27 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 117 / 1e-26 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 102 / 8e-22 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026884 [exp] 97 / 2e-20 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013832 [exp] 97 / 5e-20 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026545 [exp] 94 / 2e-19 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 92 / 7e-19 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004900 [exp] 937 / 0 AT5G67570 862 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G459900 [exp] 388 / 2e-119 AT1G30610 782 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.009G092100 [exp] 115 / 2e-26 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 113 / 1e-25 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 108 / 6e-24 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 96 / 7e-20 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.004G205600 [exp] 91 / 1e-18 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G180000 [exp] 90 / 2e-18 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050180 [exp] 86 / 6e-17 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 85 / 9e-17 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025202 pacid=23167871 polypeptide=Lus10025202 locus=Lus10025202.g ID=Lus10025202.BGIv1.0 annot-version=v1.0 ATGGCACTTCCTCCTTCTTCTTCATCTTTTCCCCCACGCAAATTCCAGCCCAACGTTGAAATCATCAAGCGGAGGCTTCTGAAGAAAGGTGTAGAACCAA CGCCCAAAATCATTCACACCCTCCGCAAGAAAGAAATCCAGAAACACAACCGCAAGTTGAACAAAATCAGCCGCAGCCAGCATACTCCACCTCTTACAGA ATCAGAGAGGCAAACACTATCGGAGGTATCCCACTTCCAGACGGTGGAGCGAGAGTACAAGACCTATACTGAAGAAGTTGAGTCGAGGGGAAGGAATGAG GTTCGTTTGGTGGGGAGACCATGGGAAAGTATGGATAGACTGAGGCTTAAGGAGATTGCTAGCGCAAATAAAGAGTTCGATGGAGGGAAGCTGAAGAGGG ATAATCTAAGGGAGCTGAAAGAGACTTTCGAGGGCAATTTGAAATGGGTGTTGGATGATGACGTGGATTTTGAAGATGATGAAATAGCGACGAGTGTTAA TGATTCCAATTGGGAACCATCAATGCGGAAACGCAGTGAAGGGGAAGCTATCCGGTTTCTCGTAAATAAGTTGTGCTGTAAAGAAGTTACTTTGAAGGAC TGGAAATTAGCTAGGATGATGAAGCAGTCATGCTTGGAATTTACAGAAGGGCAGTTGCTGAAGATTGTGGAGAGGCTTGGGGCGAAAAGGAAATGGAAGC AAGCTTTGGCTGCTGTGGGATGGGTGTATACCGATAAGGATCGAAGTGATCTTAAGAGCAGGCAAGAGCTCTTTGGTGTCTTGTTTGTATACACAAAGCT CTTGTCAGTCCTTGGGAAGGCAAGGAGACCCCAGGAAGCTCTTCACATCTTTAATCTGATGCGAGAAGATTGCAGTACATACCCAGATATGGCTGCATAT CACAGTATTGCTGTCACACTCGGTCAAGCTGGTCTTGTGAAGGAATTGATGAAAGTTATTGAATGCATGCGAGAGAAGCCTCCTAAAAAGCTTAGGGATA TGCGGAAGAAGGATTGGGACCCAGTCCTTGAACCAGATTTGGTTATATATAATGCTGTACTAAATTCTTGCATTCCATCGGAGCATTGGAAGGGTGTATC ATGGGTATTTGAACAGCTGAGAAAGGGTGGTCTGAAACCTAATGGAGCAACGTACGGGTTAGCAATGGAGGTAATGCTGCATTCAGGCAAATACGATTTA GTTCACGAGTTCTTTAGCAAGATGAACAGAAGTGGAGAAGCTCCAAAAGCGCTTACATACAGAGTTCTTGTTAGAGCTCTTTGGGAGGAAGGTAAAGTGA ACGATGCTGTGGAAGCAGTAAGAGATATGGAGCAGAGGGGTGTGGTTGGGGTAGCTAGTGTATATTATGAGCTAGCGTGCTGCCTATGCTACCATGGGAG ATGGCGAGAAGCCTTGCAACAGGTTGACAAAATCAAAAGGATTCCCCAAAGTAAACCATTGGAGTACACTTTCACCGGCATGATCCTAGCTGCCAGGGAT GGTGATCAGATCCTTGATTGTATGTCTATCTTTGAGCATATGAAATCTCAGTGTGTCCCCAACATTGGGACTATAAACACGATGCTGAGAGTTTATGGTC AAAATGATTTCTTCTCTGCGGCTAAGAGTTTGTATGAAGAAATTAAGCAGACTGGCAGTGCTGATCGTGCTCCAGTCATACCAGATGGGTACACGTATAG TACTATGCTTGAAGCATCTGCTGACGCCCTCGAATGGGAATACTTTGATCACGTGTACAGAGAAATGGTGTTTTCTGGGTATCAGTTGGACCAAACAAAA CATGGGTTGCTACTCGTGAAAGCTTCTAAAGCTGGGAAGGGACATCTTTTGGAGCATGCATTCAATGCGATTCTGGAAGCAGGAGAAATCCCTTGTTCAT TTTACTTCACTGAACTGGTATTCCAAGCGACAGTGCATGAGAATTACGAGAAAGCAGTTGCCCTCGCGCATACTGCAGCTTATGCACCATTCCAGATCGA TGAAAGCCTGTGGAAAGATGTTTTTAAGTCTTATGAAAATAAGATCAGCAAGGACAGTTTACAGAGACTGTTAGTTGCACTTGGTGATTGCGATGTTCAG TCGGAAGTGACTCTTTCAAACTTGAAAAAATCATTGCAAGAAGCACTCTGTGGGTATCAATCACCTGATGGCATGGGAAGTTCGATTTCTAGGTTCAATT CTGGAATAGCTGGTGACGAGGTCAGTATGCCATCTTCAGAAGATGGGAGTATGGAAGTCCATGTCCGAACTGCATCTTCTGTTGATTATTATGATGAGGA TGGAAAGGATGGCGAGTTTGAACTGGAAATACTAAGTAATGAGAGTGATAGCCACCACCTTGTATCTTTGCCAAATTTGCCATCGGCAGCTGAAATCCTA AATCATTGGGATGACAGTAGGAAAACCAAGCCAGGGAATTGA
AA sequence Show only first row Show all	>Lus10025202 pacid=23167871 polypeptide=Lus10025202 locus=Lus10025202.g ID=Lus10025202.BGIv1.0 annot-version=v1.0 MALPPSSSSFPPRKFQPNVEIIKRRLLKKGVEPTPKIIHTLRKKEIQKHNRKLNKISRSQHTPPLTESERQTLSEVSHFQTVEREYKTYTEEVESRGRNE VRLVGRPWESMDRLRLKEIASANKEFDGGKLKRDNLRELKETFEGNLKWVLDDDVDFEDDEIATSVNDSNWEPSMRKRSEGEAIRFLVNKLCCKEVTLKD WKLARMMKQSCLEFTEGQLLKIVERLGAKRKWKQALAAVGWVYTDKDRSDLKSRQELFGVLFVYTKLLSVLGKARRPQEALHIFNLMREDCSTYPDMAAY HSIAVTLGQAGLVKELMKVIECMREKPPKKLRDMRKKDWDPVLEPDLVIYNAVLNSCIPSEHWKGVSWVFEQLRKGGLKPNGATYGLAMEVMLHSGKYDL VHEFFSKMNRSGEAPKALTYRVLVRALWEEGKVNDAVEAVRDMEQRGVVGVASVYYELACCLCYHGRWREALQQVDKIKRIPQSKPLEYTFTGMILAARD GDQILDCMSIFEHMKSQCVPNIGTINTMLRVYGQNDFFSAAKSLYEEIKQTGSADRAPVIPDGYTYSTMLEASADALEWEYFDHVYREMVFSGYQLDQTK HGLLLVKASKAGKGHLLEHAFNAILEAGEIPCSFYFTELVFQATVHENYEKAVALAHTAAYAPFQIDESLWKDVFKSYENKISKDSLQRLLVALGDCDVQ SEVTLSNLKKSLQEALCGYQSPDGMGSSISRFNSGIAGDEVSMPSSEDGSMEVHVRTASSVDYYDEDGKDGEFELEILSNESDSHHLVSLPNLPSAAEIL NHWDDSRKTKPGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10025202 [exp]	0	1
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	1.7	0.9165
AT1G67910			unknown protein		Lus10023630 [exp]	4.2	0.9050
AT5G47860			Protein of unknown function (D...		Lus10024193 [exp]	6.0	0.8460
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	6.6	0.8727
AT2G01870			unknown protein		Lus10030135 [exp]	8.8	0.8926
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	15.7	0.8606
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	17.7	0.8640
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	18.4	0.8426
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	18.7	0.8299
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	19.4	0.8604

Compare expression of checked genes

Lus10025202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.