Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025204 pacid=23167785 polypeptide=Lus10025204 locus=Lus10025204.g ID=Lus10025204.BGIv1.0 annot-version=v1.0 ATGAGTTATTACAACAACCAGCAGCCACAGCCACCTGTCGGAGTCCCTCCTCCTCAAGGGTACCCGAAAGATGCATACCCACCGCAAGGATACCCAGTAC AGGGGTATCCTCCTCAGGGGTATCCTCAACAGCAAGGGTATCCTCCGCAGCAGGGTTATCCTCCTCAGCAATACGGTCAGGCTCCTCCCAGGAAAGAAGT TGGCTTCCTTGAAGGATGGTCACTTAGCGGCCTTATGCTGTTGTTGCATGCTGGATGCTTGTTTCTGAAGTGGAGGGATGCTACGAAGCTGGCACTGGTT CTATTCCAGCTTGATGTTTGA
AA sequence Show only first row Show all	>Lus10025204 pacid=23167785 polypeptide=Lus10025204 locus=Lus10025204.g ID=Lus10025204.BGIv1.0 annot-version=v1.0 MSYYNNQQPQPPVGVPPPQGYPKDAYPPQGYPVQGYPPQGYPQQQGYPPQQGYPPQQYGQAPPRKEVGFLEGWSLSGLMLLLHAGCLFLKWRDATKLALV LFQLDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025204 [exp]	0	1
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	1.0	0.9548
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	1.7	0.9390
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	2.4	0.9430
AT2G23810		TET8	tetraspanin8 (.1)		Lus10008891 [exp]	3.2	0.9110
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	4.9	0.9078
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	5.3	0.9311
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	5.3	0.8999
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10024263 [exp]	6.7	0.9261
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	7.5	0.9186
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10032556 [exp]	7.6	0.8472

Compare expression of checked genes

Lus10025204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.