Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37680 584 / 0 HHP4 heptahelical protein 4 (.1.2) AT4G38320 556 / 0 HHP5 heptahelical protein 5 (.1) AT4G30850 241 / 3e-76 HHP2 heptahelical transmembrane protein2 (.1.2) AT2G24150 234 / 5e-74 HHP3 heptahelical protein 3 (.1) AT5G20270 218 / 7e-68 HHP1 heptahelical transmembrane protein1 (.1) AT2G40710 166 / 1e-50 Haemolysin-III related integral membrane protein (.1) AT4G38290 137 / 2e-39 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011713 [exp] 816 / 0 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10010605 [exp] 442 / 8e-155 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2) Lus10008057 [exp] 209 / 1e-63 AT5G20270 394 / 6e-137 heptahelical transmembrane protein1 (.1) Lus10038120 [exp] 207 / 1e-63 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10036605 [exp] 148 / 9e-41 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10035823 [exp] 92 / 1e-19 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 43 / 0.0001 ND 47 / 2e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G006000 [exp] 657 / 0 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2) Potri.007G005800 [exp] 634 / 0 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2) Potri.T124407 [exp] 287 / 4e-94 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.018G124754 [exp] 286 / 7e-94 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.018G102400 [exp] 261 / 8e-84 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.006G064400 [exp] 254 / 2e-81 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF03006 [flax] [poplar] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Lus10025206 pacid=23167814 polypeptide=Lus10025206 locus=Lus10025206.g ID=Lus10025206.BGIv1.0 annot-version=v1.0 ATGGATCTAGGCGGTGATGAGCACACTGAATCACCCGACAATGACCAATTAGTCTCTTCCGATATCACATCTGAAACGGCAACGGAAAATCATCAAGATG CCTCTCCCAGAGGAGGGAAAGGACAAAGATTGTGGAAGAAAGTGAAGTACCAGCTTGTGGAGTACCATACCTTGCCCGCCTATTTAAGGGATAACGAATA TATTCATGGCTATTACAGAGCTGAATGGCCACTTAAGCAGATTCTTCTTAGCATTTTCACCATTCACAATGAGACTTTGAATGTCTGGACGCATTTGATT GGCTTTTTTCTTTTTCTTTCGTTGACCATCTATACAGCAATGAAGGTTCCAAATGTCCACCTTCATTCTATGCATCTGTCAGATGCTCTGAAAGCTGATT TGCACAAATTGCATTCATGCCTACCTTCTTTACCACACATGCCCGATCTTCATAGACTCAGGGATGAGCTAAAGACTACATTGCCTTCGATGGATTTCTC AGGATGGCATGTTACAGAACTTCTCTACAATTGTTTGCCTGAGCGATTTTCCTATGTCAACCACACTGATGTTTGTCGCTTGCGGAGCATGACAGATGAT GTAGGGAATATGATAGCACCACTTATGGTGAGACCTATCACCAGATGGCCGTTTTTTGCCTTCATGGGAGGAGCAATGTTCTGCTTGCTTGCTAGCAGCA TATGTCACCTTTTCTCTTGCCACTCGGAGCGCATGGCATATATAATGCTCCGGGTTGATTATGCTGGAATTGCAGCTCTGATAGCGACCTCCTTCTACCC ACCAGTATACTATTCCTTCATGTGCAATCCATTCTTCTGCAACCTCTACTTGGGATTCATAACCCTATTTGGGATTACCACTGTTTTGTTCTCGTTACTC CCAGTTTTCCAAAACCCGGAATGGCGTACAGTTCGTGCATCCCTCTTCTCTTTCATGGGTCTTTCTGGAGCAGCGCCCATATTGCACAAGCTCATAGTGT TCTGGCACCAGCCTGAGGCACTCCACACCACTGGGTATGAACTCCTAATGGGATTTTTCTATGGACTTGGAGCTGTGGTATATGCAACAAGAGTTCCAGA GCGGTGGATGCCTGGGAAATGTGACCTTGCAGGCCACAGTCACCAATTTTTCCACGTGCTAGTGGTGGCTGGAGCTTATGCCCATTACCGGGCAGGACTT GTTTACCTAAAATGGAGAGACCTCCATGGATGCTAA
AA sequence Show only first row Show all	>Lus10025206 pacid=23167814 polypeptide=Lus10025206 locus=Lus10025206.g ID=Lus10025206.BGIv1.0 annot-version=v1.0 MDLGGDEHTESPDNDQLVSSDITSETATENHQDASPRGGKGQRLWKKVKYQLVEYHTLPAYLRDNEYIHGYYRAEWPLKQILLSIFTIHNETLNVWTHLI GFFLFLSLTIYTAMKVPNVHLHSMHLSDALKADLHKLHSCLPSLPHMPDLHRLRDELKTTLPSMDFSGWHVTELLYNCLPERFSYVNHTDVCRLRSMTDD VGNMIAPLMVRPITRWPFFAFMGGAMFCLLASSICHLFSCHSERMAYIMLRVDYAGIAALIATSFYPPVYYSFMCNPFFCNLYLGFITLFGITTVLFSLL PVFQNPEWRTVRASLFSFMGLSGAAPILHKLIVFWHQPEALHTTGYELLMGFFYGLGAVVYATRVPERWMPGKCDLAGHSHQFFHVLVVAGAYAHYRAGL VYLKWRDLHGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10025206 [exp]	0	1
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10015471 [exp]	2.0	0.8442
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	2.0	0.8248
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	2.4	0.8368
AT3G21700		ATSGP2	Ras-related small GTP-binding ...		Lus10015119 [exp]	3.0	0.8115
AT2G26520			unknown protein		Lus10020993 [exp]	4.7	0.8048
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10013371 [exp]	6.2	0.7916
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	6.9	0.8348
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	7.4	0.8166
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	7.5	0.8152
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	11.0	0.8158

Compare expression of checked genes

Lus10025206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.