Plant FIBer expression Database

Lus10025207 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37700 44 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011707
[exp]
178 / 1e-57 AT4G37700 45 / 2e-06 unknown protein
Lus10011553
[exp]
54 / 2e-09 ND 49 / 4e-08
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G006300
[exp]
61 / 4e-12 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1)
Potri.007G006100
[exp]
54 / 2e-09 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence
>Lus10025207 pacid=23167794 polypeptide=Lus10025207 locus=Lus10025207.g ID=Lus10025207.BGIv1.0 annot-version=v1.0
ATGGGGAAAGTACTAATGAAGGGAAGCAGAGTGAAGAAGCTCCTGAAACTGCCAATCAGATTCCTGGTCAAAGCCAGGGACTTCTATGTCATTGGAATGT
CCCAATTGTCCGACCAGATGAGGTACGAAGCTGTTTCCTCCTTGGGTTGTCCCATCCACATCAGAACCGTCCCCAGGAGCTTCAGCGTCGGAACCACATC
CTCCACCAAAACGGGCTCTCAGTACAGCTGCGAGCTCGCCAGGGCAGCTTCAGTCAGGAGAAACAAGATTACTCTTCAGGATTCGAGTAAAAAAACTTCA
GGAATCACCAGGGAAGTCGGGAAGGTGCCAAGGAGTCAGAGCGTCGGACTTGGGAGAATTGAGGAGGAGGAAGAGAAATCTGAGTGTCTTTCTGGGGAAA
TTTCTTTCTGCACAAGTTCTGGTTTTCCTAGAAGCAAAAGCTGTGCTGTTTCTGGTGGTGGTAGTGTTCTGTACGTTGGGAGTTCCAGTGATATTCTGAA
GTCAGCAGCAATGGCCACGGCTTAA
AA sequence
>Lus10025207 pacid=23167794 polypeptide=Lus10025207 locus=Lus10025207.g ID=Lus10025207.BGIv1.0 annot-version=v1.0
MGKVLMKGSRVKKLLKLPIRFLVKARDFYVIGMSQLSDQMRYEAVSSLGCPIHIRTVPRSFSVGTTSSTKTGSQYSCELARAASVRRNKITLQDSSKKTS
GITREVGKVPRSQSVGLGRIEEEEEKSECLSGEISFCTSSGFPRSKSCAVSGGGSVLYVGSSSDILKSAAMATA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G37700 unknown protein Lus10025207
[exp]
0 1
AT1G24420 HXXXD-type acyl-transferase fa... Lus10025521
[exp]
5.7 0.7010
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Lus10005190
[exp]
21.7 0.6546
AT1G08580 unknown protein Lus10000388
[exp]
35.1 0.6182
AT1G54730 Major facilitator superfamily ... Lus10029962
[exp]
41.9 0.6331
AT4G38080 hydroxyproline-rich glycoprote... Lus10029845
[exp]
47.6 0.6055
AT1G30800 Fasciclin-like arabinogalactan... Lus10023390
[exp]
53.7 0.5748
AT5G20140 SOUL heme-binding family prote... Lus10019445
[exp]
56.9 0.5992
AT2G32030 Acyl-CoA N-acyltransferases (N... Lus10024705
[exp]
60.0 0.5880
AT5G16460 Putative adipose-regulatory pr... Lus10026836
[exp]
119.2 0.5826
Lus10011286
[exp]
205.7 0.5663

Lus10025207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.