Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08670 223 / 2e-64 unknown protein AT3G51540 85 / 3e-17 unknown protein AT2G40070 81 / 1e-15 unknown protein AT3G09000 65 / 1e-10 proline-rich family protein (.1) AT1G27850 59 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021382 [exp] 548 / 0 AT3G08670 432 / 4e-145 unknown protein Lus10040188 [exp] 87 / 1e-17 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 74 / 4e-14 AT2G40070 321 / 5e-107 unknown protein Lus10030402 [exp] 62 / 8e-10 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 61 / 3e-09 AT2G40070 551 / 0.0 unknown protein Lus10006433 [exp] 59 / 2e-08 AT1G27850 501 / 1e-158 unknown protein Lus10011374 [exp] 58 / 3e-08 AT2G40070 151 / 8e-37 unknown protein Lus10024526 [exp] 52 / 8e-07 AT2G40070 66 / 2e-11 unknown protein Lus10027767 [exp] 49 / 1e-05 AT2G40070 288 / 5e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139500 [exp] 280 / 2e-85 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 266 / 2e-80 AT3G08670 251 / 1e-75 unknown protein Potri.008G066900 [exp] 85 / 6e-17 AT2G40070 321 / 1e-102 unknown protein Potri.010G190300 [exp] 78 / 8e-15 AT2G40070 368 / 6e-121 unknown protein Potri.016G114900 [exp] 75 / 9e-14 AT2G40070 352 / 7e-114 unknown protein Potri.010G056200 [exp] 58 / 2e-08 AT1G27850 240 / 1e-64 unknown protein Potri.010G177000 [exp] 55 / 9e-08 AT2G40070 82 / 9e-17 unknown protein Potri.008G178600 [exp] 54 / 3e-07 AT1G27850 567 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025209 pacid=23157369 polypeptide=Lus10025209 locus=Lus10025209.g ID=Lus10025209.BGIv1.0 annot-version=v1.0 ATGAGTAGAAGTAACTTCAGAGATTCTCTCGGCGGCGGCGGAGGAAGAACTCTGCTCGCTGCATCTCATCATCTCCACCGCCGAGGTAACAGCTTGAATT CTCTATCCAAGGACTCCGGTGAGAACCTGGACCTCTTCTCCAAGAACCGCCGCTCCCTCTCCCTCGCCCCTTCCGACGATTCCCCCGACGATTCTCCATT AACTTTCCAAAACGCAAGGAAAGCGATGTTTACTCCTCGGTTTTTTTCTACTACTACTGATAATAATCCACTACTGCGACACTATATTAATTATTGCCAG ATTGTCTGGCTTTCTCCACTCTCCATCACATATTTTGGATTTGTTAATTTCCTCGATCAGCTTGTGCTTCCTGGATCGACGGATCCGAATCTCATGTTCG TTTATGACGATCTGGTTTCATCTTTTACAGTTTCAGTCAAACTAGGAAGACTTTCACTTGGATCTGCGAAGGTTTTCCCCAGAGGCGGGATCGACGATCT ACTCTCCACAGCTGAAGGAGGCAAAAACGATTATGACTGGCTTCTCACGCCCCCTGGAACTCCTCTTTTCCCGTCAACGGAGGCGAATGAGTCACAGCCG CCTTCAGTGGCTCCCAGGACCGGTGGTCTGGGCAGATCTATTTCCACTGCAAAGTCTTCAAGGCTTTCAGTTTCACAGTCAGAGAGCTATCATTCCTCAA GACCTGCTAGAAGTAGTTCAGTGACTCGTTCTTCTTCCTCTACTTCACATTTCAATACATATTCATCCAATAGATCTCCTTCTTCTATGCTAAACACAAG CTCAGCTTCAGTCTCATCATATACAAGACCATCCTCCCCTGTTACTCGTTCACCTTCCATAGGAAGACCTTCAACACCATCATCAGGCCGTTCAACTGGA TCAAGGCCATCAACTCCATCCAGAGCTCGTCCATCACCACCTGAAAAGAGTACTCGACCATCCCAAACCTCAAGGCCTTCAACGCCCAGTTCCAGGCCTC AAACTCCTGCAAGCATGAATCCACCAGCTGCTCGATCTCGTCCATCAACACCCACACGCCGAACTCCTTTGCCTTCTGTTTCTTCATCGTCAACTTCAGC TGGACGTGCTGCTTCAAACGGGCGCATGTCTGTACCATCATCTCGCCCTAGCTCTCCCAGTCCACGAGTCCGATCCACTCAGCAACCTGTTGTTCCTCCT GATTTTTCGCTAGACACTCCTCCGAACCTTAGAACAACTTTGCCGGACAGACCTCTTTCTGCTGGGAGGTCCAGGCCAAGTGCTGCCATTAATGGGAAAC CAACCCCGGACAGTGCTGGCTTTGGTAATGTGCCTCCGCGGAGGAATCCGTCTCCAATCGTAACAAGGGGAAGAGTCTCGGAACCCCCTGGAAGGAGTCG GATCCATTCCAATGGGCATGGCTCGGATATTTCCGAGTCCAGAAGAAGTGTGCATGGAGCGGATATATCCGAGTCCAGAAGAAGCACACATGGATCGGAT CCAGGAGCAAGGAGAGCTTTGAAGCCATCCTCTACTGCTACGGACAGCACAGGATTCGGAAGAACGATATCAAAGAAGTCCATTGATATGGCTGTCAGAC ATATGGACATAAGAAATGGAGCAGGAGGTACTCGGCCCCTATCAGGAACAACACTCTTCCCTCAAAGCATCCGAGGTGGCTCCATGAAACCCGAAAGCCA TAACCAGAGCCAGACAGTTCGTTCTTCTTCGAGCGCTTTAGACGTGAGTGGTAACAGTTACCTTCACAATGGAGCGGCTGTGGAAAACGGCCATTATGCA GCGGCTGGAAGAAGTCATCATCAGGTGGGAAATGAAGGACGGCAGTTTGCGAGATTGGGCGAAGGTGACATCTACGAGAGCTCGCGCTATGATGCCATGT TACTGAAAGAGGACGTTAAGAACATGAACTGGCTGCACAGTGTGGACGACGATAAGTTCGATCAAGCTTCGATCTTCGATCATGGATTTGAGCCTCTTCC TGAACCCTTTTCTCCACTATAA
AA sequence Show only first row Show all	>Lus10025209 pacid=23157369 polypeptide=Lus10025209 locus=Lus10025209.g ID=Lus10025209.BGIv1.0 annot-version=v1.0 MSRSNFRDSLGGGGGRTLLAASHHLHRRGNSLNSLSKDSGENLDLFSKNRRSLSLAPSDDSPDDSPLTFQNARKAMFTPRFFSTTTDNNPLLRHYINYCQ IVWLSPLSITYFGFVNFLDQLVLPGSTDPNLMFVYDDLVSSFTVSVKLGRLSLGSAKVFPRGGIDDLLSTAEGGKNDYDWLLTPPGTPLFPSTEANESQP PSVAPRTGGLGRSISTAKSSRLSVSQSESYHSSRPARSSSVTRSSSSTSHFNTYSSNRSPSSMLNTSSASVSSYTRPSSPVTRSPSIGRPSTPSSGRSTG SRPSTPSRARPSPPEKSTRPSQTSRPSTPSSRPQTPASMNPPAARSRPSTPTRRTPLPSVSSSSTSAGRAASNGRMSVPSSRPSSPSPRVRSTQQPVVPP DFSLDTPPNLRTTLPDRPLSAGRSRPSAAINGKPTPDSAGFGNVPPRRNPSPIVTRGRVSEPPGRSRIHSNGHGSDISESRRSVHGADISESRRSTHGSD PGARRALKPSSTATDSTGFGRTISKKSIDMAVRHMDIRNGAGGTRPLSGTTLFPQSIRGGSMKPESHNQSQTVRSSSSALDVSGNSYLHNGAAVENGHYA AAGRSHHQVGNEGRQFARLGEGDIYESSRYDAMLLKEDVKNMNWLHSVDDDKFDQASIFDHGFEPLPEPFSPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08670			unknown protein		Lus10025209 [exp]	0	1
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	1.4	0.9152
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	1.7	0.9155
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	5.5	0.8721
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	5.7	0.9031
AT3G08670			unknown protein		Lus10021382 [exp]	7.1	0.8803
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	8.1	0.8766
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	9.5	0.8853
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	9.8	0.8780
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	11.5	0.8938
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	12.0	0.8783

Compare expression of checked genes

Lus10025209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.