Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08680 426 / 7e-141 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 409 / 3e-134 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 376 / 6e-122 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 374 / 5e-121 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 366 / 1e-117 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 328 / 6e-104 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 329 / 2e-103 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G41680 304 / 6e-98 Protein kinase superfamily protein (.1.2) AT1G48480 311 / 1e-96 RKL1 receptor-like kinase 1 (.1) AT1G64210 305 / 3e-95 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021383 [exp] 1115 / 0 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 431 / 4e-143 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 431 / 8e-143 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 416 / 8e-137 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 407 / 1e-133 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 372 / 5e-120 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 367 / 1e-118 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 369 / 7e-118 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032351 [exp] 365 / 1e-117 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139200 [exp] 441 / 6e-147 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 436 / 3e-145 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 436 / 4e-145 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 428 / 3e-141 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 385 / 6e-125 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 372 / 1e-120 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 367 / 1e-118 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 362 / 3e-116 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 357 / 4e-114 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 348 / 4e-111 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025210 pacid=23157424 polypeptide=Lus10025210 locus=Lus10025210.g ID=Lus10025210.BGIv1.0 annot-version=v1.0 ATGAAGAAGAGTCACTTCACAGCAATATTCCTCATCATCATCTCCCTTCTATCTTACCGTTCCCATGGTGACCTCAGGTCGGATCGAACAGCACTGCTCG ACTTCGCCACCTCGGTCCCCCACACTCGCAGGCTCAACTGGACCTCCAGCACCAACCCATGTACATCTTGGCTTGGGATCACTTGTCGAAAGATAGGCTC CGGTTCCCGTGTAGTAGCCATTCGCTTACCAGGCGTTGGCTTCTCCGGTCCTTTCCCTTCCAACACCATTTCGAATCTAGATGCACTCACCTCGCTCAGT CTCCGTTCCAACCATTTCTCGGATGATCTCCCGCAGGATGTGCTCTCCCTTCCTTCCATTCGTCGAATTTATCTACAGAGGAACAACTTCTCCGGAACCA TTCCTTCGTCCTTCTCGCCTAACCTTGTAGCACTTGACTTGTCCTTCAATTCTCTTGCCGGAGCCATTCCTTCCACGCTGCAGAATGCGACACAGCTTGC TCGTTTGAGGCTCGAAGGGAATGCTCTTACCGGATCCATACCACCTGCTCTCAATGTTGACGAGTTGAAACAGTTTAACGTGAGTTACAATCAACTGAAC GGTTCAATTCCATCGTCCCTCAAGAGCTTTCCTGCTTCTGCCTTTGTCGGCAACAGTGAGCTCTGTGGATCGCCTCTACAAACTAAGTGTTCTAATAATC TCGCACCTTCTCCTTCTCCTTCTATTTCCCCTGCACCTTCTTTTTCCCCAGTTCGTCCTCCACCACCGGCCAGATCCAATCCTGCAGCAGGTCCTCGAAA TCGAGCTGGTGTCTCCAACTCCAAGAAGAAGAAACTCAGCAGTGGATCAGTCATTGCAATTGCAGTAAGCTCCGTGGGGGTTGCGTTTCTAGCCATGGTT GTGTTGGTATGCTGTCTGAAGAAGAAAAAGAAAAATCAGGATGAAGGGGTCGAAGGAGTTACTAATGTTGCGAAAGTTAGAGGCGAAAAACGGGAGATGA TGATGACGCAGCCAAATGAAGGATTCGGCAGTGGGGGGCAGGAGCCTGAGAAGAACAAGTTGGTGTTCTTCAATGGATTTCCTCAAAGTTACGATCTTGA AGATCTGTTGAGAGCTTCTGCTGAAGTTCTTGGGAAGGGAAGCTACGGGACGAGCTACAAGGCGGTTTTGGAGGATGGGACGACTGTGGCTGTGAAGAGG TTGAAGGAACTTGTTGTTGGGAAGAGAGACTTCGAGCAGCAGATGGAGAGCGTTGGAAAGATGGGTCATCATTTGAACGTGGTTCCTCTACGTGCTTATT ACTATTCCAAGGATGAGAAGCTCCTGGTCTATGATTACCTGCAAGCGGGGAGCTTTTCCACTCTGTTGCATCATGAAAACAGAGCTGTTGCAGACTGGGA AACCAGAGTAAGCATCTGCCTCGGAGCTGCTAGAGGAATTGCTCATATCCATTCCGGCGGGAGGCACGTCCACGGCAACATCAGATCTTCAAACGTGTTG CTGACGAATGGCCTGCAAGGATGCATCTCGGACTTTGGATTAGCCACGATGATGAGCTACCCGGTCGTCCTGTCGAGAAATGCAGGGTATCGAGCTCCGG AGGTGGTCAGTACGAGGAAATGTAGTCAGGAGTCTGACGTGTACAGCTTCGGAGTCGTGCTGCTGGAGATGCTGACGGGGAAAGAAGTGGCCGGAACAGT GACCGGAGCAGGAGAGGAGGCGGTTGATCTACCGAGGTGGGTGCAATCCGTGTTGAGAGAGGAGTGGACTGCTGAGGTATTCGACCTGGAGCTGATGAGG CATAAGAACATTGAAGAGGAAATGGTTCAGGTGCTGCAGATTGCTATGGCTTGCATTGCAAAGTCGCCGGAGATGAGACCTAAGATGGAGCAATTGGTGC GGCTGATTGAGGAAGTACGCCCGATAACATACTCAGCCACCCCTTCTCCTTCCCCGTCAGTTTCCGTTTCCACTTCCACGGTGGACAACTGA
AA sequence Show only first row Show all	>Lus10025210 pacid=23157424 polypeptide=Lus10025210 locus=Lus10025210.g ID=Lus10025210.BGIv1.0 annot-version=v1.0 MKKSHFTAIFLIIISLLSYRSHGDLRSDRTALLDFATSVPHTRRLNWTSSTNPCTSWLGITCRKIGSGSRVVAIRLPGVGFSGPFPSNTISNLDALTSLS LRSNHFSDDLPQDVLSLPSIRRIYLQRNNFSGTIPSSFSPNLVALDLSFNSLAGAIPSTLQNATQLARLRLEGNALTGSIPPALNVDELKQFNVSYNQLN GSIPSSLKSFPASAFVGNSELCGSPLQTKCSNNLAPSPSPSISPAPSFSPVRPPPPARSNPAAGPRNRAGVSNSKKKKLSSGSVIAIAVSSVGVAFLAMV VLVCCLKKKKKNQDEGVEGVTNVAKVRGEKREMMMTQPNEGFGSGGQEPEKNKLVFFNGFPQSYDLEDLLRASAEVLGKGSYGTSYKAVLEDGTTVAVKR LKELVVGKRDFEQQMESVGKMGHHLNVVPLRAYYYSKDEKLLVYDYLQAGSFSTLLHHENRAVADWETRVSICLGAARGIAHIHSGGRHVHGNIRSSNVL LTNGLQGCISDFGLATMMSYPVVLSRNAGYRAPEVVSTRKCSQESDVYSFGVVLLEMLTGKEVAGTVTGAGEEAVDLPRWVQSVLREEWTAEVFDLELMR HKNIEEEMVQVLQIAMACIAKSPEMRPKMEQLVRLIEEVRPITYSATPSPSPSVSVSTSTVDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08680			Leucine-rich repeat protein ki...		Lus10025210 [exp]	0	1
AT2G21100			Disease resistance-responsive ...		Lus10025065 [exp]	1.0	0.9683
AT1G64000	WRKY	ATWRKY56, WRKY5...	WRKY DNA-binding protein 56 (....		Lus10036401 [exp]	1.4	0.9636
AT3G08680			Leucine-rich repeat protein ki...		Lus10021383 [exp]	2.0	0.9571
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	2.4	0.9593
AT5G14230			unknown protein		Lus10036990 [exp]	2.6	0.9498
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	4.2	0.9520
AT1G32910			HXXXD-type acyl-transferase fa...		Lus10034786 [exp]	4.5	0.9456
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10034811 [exp]	4.7	0.9438
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	5.0	0.9522
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10025281 [exp]	6.0	0.9420

Compare expression of checked genes

Lus10025210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.