Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38580 126 / 1e-32 Mitochondrial ATP synthase D chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021384 [exp] 483 / 1e-171 AT2G38580 187 / 3e-54 Mitochondrial ATP synthase D chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139000 [exp] 161 / 2e-45 AT2G38580 241 / 8e-74 Mitochondrial ATP synthase D chain-related protein (.1) Potri.006G110400 [exp] 160 / 4e-45 AT2G38580 252 / 4e-78 Mitochondrial ATP synthase D chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025211 pacid=23157379 polypeptide=Lus10025211 locus=Lus10025211.g ID=Lus10025211.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGAAGAAGAAGAAGCGAAATAAGAAAAGGAAGAACAAACAACAACAGAACAAGGCATCTGAAGACGATGCCTCCTCGGATCATACGATCA ATGGGGGAAATGCTCATCACACCGCTCTTCAAAATGGCGCGCCGCCGAACATTGATGACGCCAATGCGGGTTCGAACGCCCACCGCGGTGACAATGGAGC GGAAGAGGGTGACATGAAAGAGGAAATCAGCCGATTACACAAGGAAAATGAATTGCACACACAGAAAGAGGCGGACCTAGAGGAGAAGATCAAAGAGTTA AAAGATCGAAATGATTCACATGTACTGAAGCAGGCAGATTTTGAGGAGAAGATCAATCAATTCAAAATTGAAAAGAACACATACATGCAAAAAGAGGCTG ATCTAGAGATGAAGATTGCAGAATTACAGCGTGAAAAAGATTTAATGCTTGAAAGGGAGAATCCTTCAGACAAGAATGACGACTTGAACTCACAGGTTGA AGCAGCTCATGCACTCGTCAACAAATTGATCATGGAAAACGCAGAGCTTGTCGAGAAGGTGAATGAGTTGTACGTCAAGCTTGACCAAAAGGACTGGGAA CTTGACCGGTCTTCTGCCCCTGAAAGCGACGGCAGGGTTGCAAGTTCCGAGATTGTTGGCACATCTACTTCACCCTCAGAGTCAGTCTACAACATCCCTG GTTTGGGTAGTACGTCAGAGTCCACAGAAGTGCTGGCGCCAACAGTAGCTCGAATTCCAGTACCCTCAGAATCCAACTCGGCAGAGATCGTCCAAATCTC ACTGGACGAAAGCGAAGTCAATGGGGATTCACAGACAGCAACTGCTGAGCTTGACAATGACGCAATACCGCTTACAGATGCTCCACTCATCGGCGCTCCA TTCAGATTAATCTCTTTTGTCGCTAGCTACGTTAGTGGTGCTGATTTAGTCAACAAGAGTTAA
AA sequence Show only first row Show all	>Lus10025211 pacid=23157379 polypeptide=Lus10025211 locus=Lus10025211.g ID=Lus10025211.BGIv1.0 annot-version=v1.0 MEDEKKKKRNKKRKNKQQQNKASEDDASSDHTINGGNAHHTALQNGAPPNIDDANAGSNAHRGDNGAEEGDMKEEISRLHKENELHTQKEADLEEKIKEL KDRNDSHVLKQADFEEKINQFKIEKNTYMQKEADLEMKIAELQREKDLMLERENPSDKNDDLNSQVEAAHALVNKLIMENAELVEKVNELYVKLDQKDWE LDRSSAPESDGRVASSEIVGTSTSPSESVYNIPGLGSTSESTEVLAPTVARIPVPSESNSAEIVQISLDESEVNGDSQTATAELDNDAIPLTDAPLIGAP FRLISFVASYVSGADLVNKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	0	1
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	2.4	0.8225
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	3.9	0.8217
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	5.3	0.7876
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	5.5	0.8096
AT5G13260			unknown protein		Lus10001801 [exp]	5.7	0.8263
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	5.7	0.8212
AT4G18020	GARP	APRR2	PSEUDO-RESPONSE REGULATOR 2, C...		Lus10011044 [exp]	9.5	0.7702
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	9.5	0.7785
AT5G58510			unknown protein		Lus10031857 [exp]	28.1	0.7395
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	28.3	0.7041

Compare expression of checked genes

Lus10025211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.