Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 570 / 0 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 552 / 0 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT3G17850 263 / 4e-74 Protein kinase superfamily protein (.1) AT1G48490 252 / 3e-70 Protein kinase superfamily protein (.1.2.3) AT1G45160 250 / 3e-70 Protein kinase superfamily protein (.1.2) AT5G62310 249 / 2e-69 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 228 / 7e-66 Protein kinase family protein (.1.2) AT2G20470 226 / 1e-64 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 226 / 2e-64 Protein kinase family protein (.1) AT3G23310 225 / 3e-64 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021386 [exp] 533 / 0 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 486 / 2e-163 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 474 / 9e-158 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 410 / 1e-136 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 374 / 2e-122 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10005470 [exp] 254 / 5e-72 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2) Lus10031332 [exp] 253 / 2e-70 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10027196 [exp] 249 / 2e-69 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 246 / 2e-68 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138400 [exp] 594 / 0 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.006G109600 [exp] 594 / 0 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 488 / 1e-165 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 258 / 4e-72 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.002G263000 [exp] 251 / 3e-70 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G035600 [exp] 247 / 2e-68 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.015G129200 [exp] 244 / 1e-67 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.012G127800 [exp] 242 / 5e-67 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.008G167800 [exp] 226 / 1e-64 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.008G028800 [exp] 223 / 5e-64 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [flax] [poplar] Pkinase_C Protein kinase C terminal domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025213 pacid=23157353 polypeptide=Lus10025213 locus=Lus10025213.g ID=Lus10025213.BGIv1.0 annot-version=v1.0 ATGGTTTCCTCAACTCTAGCTGCTGGTTTGTCCAGGGCTAGGTCCCAAACAAACAAACCGCTGCAGAGCAAGTTGTTGTTTCCTGTCACCCCTCCGGATG CTGTGGTTGTCACTGACAACTTGGAGCTAGACTTTGCAGATGTCTTTGGTCCTTTGCCAGTGCAGGCATCAGTTGATTCCAACTGTGCCGAGTTCGGCAA ACTTGTTTATGATAATCCAATTGGCATTCACATTCGTTCACATTCCTTGGTTGGACCTTCGTCTTACACGAGCCAATCGCTGAAGCTCAATATGCTGACT TTGTATGAGAATGAGGGTTCAAAGGGAAATATAGAATGTCTGCAGGAGGAATCTGTTAAGGAGCTCCAGAAATCGTTAGAGGAGGATATTGTTGACAATG GCGGTACAGATTCTCTGAAGGACCACCATACCGTTGGCATTGATGATTTTGAGGTGTTGAAGGTTGTTGGTCAGGGTGCATTTGGGAAAGTTTTCCAGGT TAGGGAGAAGGGTACGTCTAAAATATATGCGATGAAGGTTATGAGGAAGGACAAGATAATGGAGAAGAATCATGTTGAATACATGAAAGCTGAGAGGGAC ATTTTGACAAAAGTTGACCATCCTTTCATTGTCCAGCTCAAATACTCATTCCAGACAAAATACAGACTGTACCTTGTTTTAGATTTCATAAATGGAGGTC ACCTCTTCTTTCAGCTTTATCACCAAGGGCTTTTCAGGGAGGATTTGGCTCGTGTATATGCAGCTGAAATTGTGTCTGCTGTATCCCATCTTCATTCAAA CGGCATAATGCATAGAGATCTGAAACCTGAGAATATCTTACTTGGGGAAGATGGGCATGTCATGCTCACTGATTTTGGCCTAGCGAAAGAATTCGACGAA AATACAAGATCAAACTCAATGTGTGGAACTGTTGAATATATGGCACCTGAAATTATTCAAGGGAAGGGCCATGATAAGGCTGCCGATTGGTGGAGTGTAG GTGTTCTGCTGTATGAGATGCTGACTGGCGAGCCCCCTTTCATTGGTGGAAATAGAGAAAAAGTTCAGCAAAAGATAGTGAAGGAAAAAATGAAGTTACC AACATTCTTGTCAAGTGAAGTACATAGTCAGAAATGTTTAGAGGAGGATATTGTTGAAAATGGCGGTACAGATTCTCTGAAGGACCACCATACCGTTGGC ATTGATGATTTTGAGGTGTTGAAGGTTGTTGGCCAGGGTGCATTTGGGAAAGTTTTCCAGGTTAGGGAGAAGGGTACGTCTAAAATATATGCGATGAAGG TTATGAGGAAGGACAAGATAATGGAGAAGAATCATGTTGAATACATGAAAGCTGAGAGGGACATTTTGACAAAAGTTGACCATCCTTTCATTGTCCAGCT CAAATACTCATTCCAGACAAAATACAGACTGTACCTTGTTTTAGATTTCATAAATGGAGGTCACCTCTTCTTTCAGCTTTATCACCAAGGGCTTTTCAGG GAGGATTTGGCTCGTGTATATGCAGCTGAAATTGTGTCTGCTGTATCCCATCTTCATTCAAACGGCATAATGCATAGAGATCTGAAACCTGAGAATATCT TACTTGGGGAAGATGGGCATGTCATGCTCACTGATTTTGGCCTAGCGAAAGAATTCGACGAAAATACAAGATCAAACTCAATGTGTGGAACTGTTGAATA TATGGCACCTGAAATTATTCAAGGGAAGGGTCATGATAAGGCTGCCGATTGGTGGAGCGTAGGTGTTCTGCTGTATGAGATGCTGACTGGCGAGCCCCCT TTCATTGGTGGAAATAGAGAAAAAGTTCAGCAAAAGATAGTGAAGGAAAAAATGAAGTTACCAACATTCTTGTCAAGTGAAGTACATAGTCTACTGAAAG GGCTGCTGCAGAAGGAAGCGAGCAGGCGGCTAGGGTGCGGAGAAAAGGGCAGTCAAGAAATCAAGAACCACAAATGGTTCAAGAAAATCAATTGGAAGAA ACTGGAGGCAAGAGAAGTGCAGCCGAGCTTCCTTCCGAATGTAGATGGGAAGAACTGCACTGCAAACTTTGAGAAGAAATGGACTGACATGCCATTGTCG GACTCGCCAGCTGCTAGCCCCAAGATCACAGTGGCAAACCCCTTTGGAGACTTCACTTATGTGAGGCCTGCTGCCACTTTTCTTCAGAACTGTTCTTATG TTGTGTTTGTTTCCTCCTCGTTCGACTCTCATCAGTGCCATGTCGTCATCCCATGGCATATTTCTGAGTCCAGCTGCGTGCAGTCGCCTCGTATTTGGCA CGGTCTGTCTTGTACATGTGTGCAATCTCTGACAGCAGAGGCTCGTCCGGGTTGGGATCCATCAATAGTGAGCATATTGACAGCAGTACCTGATGCAATA CATTCATAA
AA sequence Show only first row Show all	>Lus10025213 pacid=23157353 polypeptide=Lus10025213 locus=Lus10025213.g ID=Lus10025213.BGIv1.0 annot-version=v1.0 MVSSTLAAGLSRARSQTNKPLQSKLLFPVTPPDAVVVTDNLELDFADVFGPLPVQASVDSNCAEFGKLVYDNPIGIHIRSHSLVGPSSYTSQSLKLNMLT LYENEGSKGNIECLQEESVKELQKSLEEDIVDNGGTDSLKDHHTVGIDDFEVLKVVGQGAFGKVFQVREKGTSKIYAMKVMRKDKIMEKNHVEYMKAERD ILTKVDHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYHQGLFREDLARVYAAEIVSAVSHLHSNGIMHRDLKPENILLGEDGHVMLTDFGLAKEFDE NTRSNSMCGTVEYMAPEIIQGKGHDKAADWWSVGVLLYEMLTGEPPFIGGNREKVQQKIVKEKMKLPTFLSSEVHSQKCLEEDIVENGGTDSLKDHHTVG IDDFEVLKVVGQGAFGKVFQVREKGTSKIYAMKVMRKDKIMEKNHVEYMKAERDILTKVDHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYHQGLFR EDLARVYAAEIVSAVSHLHSNGIMHRDLKPENILLGEDGHVMLTDFGLAKEFDENTRSNSMCGTVEYMAPEIIQGKGHDKAADWWSVGVLLYEMLTGEPP FIGGNREKVQQKIVKEKMKLPTFLSSEVHSLLKGLLQKEASRRLGCGEKGSQEIKNHKWFKKINWKKLEAREVQPSFLPNVDGKNCTANFEKKWTDMPLS DSPAASPKITVANPFGDFTYVRPAATFLQNCSYVVFVSSSFDSHQCHVVIPWHISESSCVQSPRIWHGLSCTCVQSLTAEARPGWDPSIVSILTAVPDAI HS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	0	1
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	3.6	0.8207
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	5.3	0.8010
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	6.6	0.8127
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	8.4	0.8020
AT2G28390			SAND family protein (.1)		Lus10021472 [exp]	8.7	0.7544
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	8.8	0.8012
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	8.8	0.7764
					Lus10019108 [exp]	10.4	0.7341
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	12.3	0.7996
AT3G23910			unknown protein		Lus10022568 [exp]	13.0	0.7672

Compare expression of checked genes

Lus10025213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.