Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01910 105 / 9e-29 unknown protein AT4G23800 45 / 1e-05 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025130 [exp] 312 / 1e-109 AT5G01910 105 / 1e-28 unknown protein Lus10022734 [exp] 183 / 1e-58 AT5G01910 109 / 5e-30 unknown protein Lus10014179 [exp] 174 / 6e-55 AT5G01910 115 / 3e-32 unknown protein Lus10003904 [exp] 42 / 0.0002 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10001909 [exp] 42 / 0.0003 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 40 / 0.0006 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10035364 [exp] 0 / 1 AT5G01910 44 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109400 [exp] 162 / 2e-50 AT5G01910 96 / 6e-25 unknown protein Potri.016G138300 [exp] 159 / 2e-49 AT5G01910 122 / 2e-35 unknown protein Potri.001G093700 [exp] 44 / 6e-05 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025214 pacid=23157436 polypeptide=Lus10025214 locus=Lus10025214.g ID=Lus10025214.BGIv1.0 annot-version=v1.0 ATGCCGCCCCTTCAATCTCCACTCACCGGAGACCAGAAGCCAAGACTGATGAGCGGCCGGAAGCCTCTCCAACCAAAGAATTCACGTGTCGAATCAGAGA TCAAGATTTCAAAGCCAGCCCCAAAGTGGGATTATGTCGGGGATAATAATGACAAGGAGAACCATCACCAGCAACTGCATCCAATTAAAGCCACTCCTCC TCCGGCAAGTAAGCTCATCGATCCAATGGATTCATCGCTGGCGGAGGAGCTGACAGAAATGCGGAAGAGGATGGAGAGACTGAGGTTCGACGCGGAGAAG ACGGAGCAGATGCTGAAGGAGAGAGGGAAGGCGTTGGATTTGCAGATGAAGGAGTTGGAAGCTAGGGGAGTAGCTCAGATCATGTTGGAGTTGGAGGTGG ATCGCCTCTACAGATTCAAGGAACTTCACTCTTACTCCATGAGGATTTCCCCAGTTCGATCGCTAAGAGACAAGGAACAAGAAAAGCTGGGTCGCGTGGA GGAAATGGTGACGGGAAATAGCAGCCACGGGTTGGAGGGCGGGAATCAGAGTCCCTGCTGTTCAAGCTCCAGCTGCAATTCCATTTCAACACATCCGGCC ACTGTTCCTGCTGTGCAGTAA
AA sequence Show only first row Show all	>Lus10025214 pacid=23157436 polypeptide=Lus10025214 locus=Lus10025214.g ID=Lus10025214.BGIv1.0 annot-version=v1.0 MPPLQSPLTGDQKPRLMSGRKPLQPKNSRVESEIKISKPAPKWDYVGDNNDKENHHQQLHPIKATPPPASKLIDPMDSSLAEELTEMRKRMERLRFDAEK TEQMLKERGKALDLQMKELEARGVAQIMLELEVDRLYRFKELHSYSMRISPVRSLRDKEQEKLGRVEEMVTGNSSHGLEGGNQSPCCSSSSCNSISTHPA TVPAVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01910			unknown protein		Lus10025214 [exp]	0	1
AT3G13980			unknown protein		Lus10025011 [exp]	2.6	0.7931
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10002579 [exp]	10.2	0.7757
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	10.9	0.7874
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	13.1	0.7833
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10007758 [exp]	16.6	0.7314
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	17.3	0.7710
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	17.9	0.7768
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Lus10017381 [exp]	20.4	0.7190
					Lus10042115 [exp]	20.5	0.6726
AT1G11915			unknown protein		Lus10038443 [exp]	21.9	0.7671

Compare expression of checked genes

Lus10025214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.