Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38560 372 / 4e-128 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 130 / 3e-33 F-box family protein (.1.2) AT4G18720 119 / 5e-31 Transcription factor IIS protein (.1) AT5G42325 93 / 7e-22 Transcription factor IIS protein (.1) AT2G33090 67 / 1e-12 Transcription elongation factor (TFIIS) family protein (.1) AT5G25520 67 / 4e-12 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G33300 66 / 5e-12 Transcription elongation factor (TFIIS) family protein (.1) AT2G25640 67 / 8e-12 SPOC domain / Transcription elongation factor S-II protein (.1) AT2G13640 66 / 1e-11 Transcription factor IIS family protein (.1) AT5G27310 62 / 1e-10 Transcription factor IIS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025131 [exp] 652 / 0 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 437 / 6e-154 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 431 / 2e-151 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 297 / 1e-99 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 141 / 3e-40 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029017 [exp] 72 / 7e-15 AT2G38560 70 / 1e-14 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10008108 [exp] 63 / 2e-10 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 61 / 7e-10 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10005984 [exp] 42 / 0.0001 AT1G01210 112 / 2e-33 DNA-directed RNA polymerase, subunit M, archaeal (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G138100 [exp] 416 / 2e-145 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 408 / 2e-142 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G246800 [exp] 67 / 9e-12 AT5G25520 536 / 1e-173 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.018G034500 [exp] 66 / 2e-11 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.012G015900 [exp] 40 / 0.0005 AT4G07950 124 / 5e-38 DNA-directed RNA polymerase, subunit M, archaeal (.1) Potri.001G307600 [exp] 42 / 0.0006 AT5G09850 336 / 4e-114 Transcription elongation factor (TFIIS) family protein (.1) Potri.019G003900 [exp] 41 / 0.001 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [flax] [poplar] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF01096 [flax] [poplar] TFIIS_C Transcription factor S-II (TFIIS) CL0167 [flax] [poplar] PF08711 [flax] [poplar] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Lus10025215 pacid=23157386 polypeptide=Lus10025215 locus=Lus10025215.g ID=Lus10025215.BGIv1.0 annot-version=v1.0 ATGCCTAGCCCCAAGGACGTTGAGGTTATCGAATTGTTCGAGTCCGCCAAGAAATCCGGTGATGACGCCGTCGGGGACGAAGTCTCCGCCAATGCTCCGG AGGTCGCTCGTTGTGTTGATGCCCTCAAACAGCTCGGCAATTACCCCATTACTTACGAGATTCTCGTATCTTCTCAGGTCGGAAAACGACTAAGGGCTCT AACCAAGCATCCAATAGAGAAGATTCAAAACACCGCTAGTGACTTGCTCGAGAGTTGGAAACAGTTGGTTGTGGAGGAGACCACTAGAAGGAAGAAAGTC GAGAAGGCTTCAGCTGAAGGTGCCGGGGAAGTAGATAAATCATCCGGTGTTGGTGCAGTCAAAGTTGAAGAAACTGTGAAGGTGGAGAAGATCGTTAAGG AAGAGAGAGGAGCTTCCCATGTGAAGAAATCCCCACAGGTAGTAATTGCTCCTCCAAAGCGTAGACCTGAAACTGTGAAGGTTGAGAAGATAGCAAAGCA GGAGCAAGATGCTTCATTTGCAAAGAAACCACCTCAGGCAGCTGTTGCTCCTCCTAAGCATAGTTCGCTGGTAAGATGCAATGATGCATTGAGGGATAAA GTCCGCGAACTTCTTGTAGAGGCCATGGAAAAGGTCCCTGCAGAGGTTGATGGTAATCTGAAGCATGAAGTGGACTCTTGCGATCCAATCAGAGTTGCTG TATCGGTTGAAACCTCGATGTTTGAGAAGTTGGGGAAGTCAAATGGAGCTCAGAAGGTCAAGTATAGATCAATAATGTTCAACTTGAAAGATCCGAAAAA CCCAGATTTGAGGAGGAAAGTTCTGCTAGGGCAAGTCAACCCCGAGATGCTCATTACGATGACCGCTGAAGAGATGGCAAGCGACCAAAGGCAGCAAGAG AATAAACAAATAAAAGAGAAGGCACTGTTTGACTGCCAGGTTGGCGGTCCACCTAAGGCTACGACTGATCAGTTCAGGTGTGGACGTTGTGGTCAACGCA AATGTACGTACTACCAGATGCAGACTAGGAGTGCCGATGAGCCCATGACTACATATGTGACATGTGTCAACTGTAACAAGCACTGGAAATTCTGTTAG
AA sequence Show only first row Show all	>Lus10025215 pacid=23157386 polypeptide=Lus10025215 locus=Lus10025215.g ID=Lus10025215.BGIv1.0 annot-version=v1.0 MPSPKDVEVIELFESAKKSGDDAVGDEVSANAPEVARCVDALKQLGNYPITYEILVSSQVGKRLRALTKHPIEKIQNTASDLLESWKQLVVEETTRRKKV EKASAEGAGEVDKSSGVGAVKVEETVKVEKIVKEERGASHVKKSPQVVIAPPKRRPETVKVEKIAKQEQDASFAKKPPQAAVAPPKHSSLVRCNDALRDK VRELLVEAMEKVPAEVDGNLKHEVDSCDPIRVAVSVETSMFEKLGKSNGAQKVKYRSIMFNLKDPKNPDLRRKVLLGQVNPEMLITMTAEEMASDQRQQE NKQIKEKALFDCQVGGPPKATTDQFRCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCNKHWKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	0	1
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	4.7	0.9313
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	5.7	0.9223
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10031586 [exp]	6.3	0.9040
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	6.8	0.8935
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	8.5	0.9054
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	10.5	0.9137
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	11.4	0.8677
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	12.2	0.8994
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	13.0	0.8994
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	13.0	0.9099

Compare expression of checked genes

Lus10025215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.