Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 120 / 2e-31 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 102 / 1e-24 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT1G66550 88 / 5e-20 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2) AT5G24110 88 / 9e-20 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT1G66600 86 / 2e-19 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1) AT1G66560 85 / 8e-19 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1) AT5G22570 84 / 3e-18 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1) AT5G01900 82 / 1e-17 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT2G46400 79 / 1e-16 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT2G40740 78 / 2e-16 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025133 [exp] 426 / 2e-150 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10014177 [exp] 169 / 6e-50 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 157 / 2e-45 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10012870 [exp] 122 / 3e-32 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 121 / 6e-32 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 119 / 5e-31 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10034244 [exp] 117 / 2e-30 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10001902 [exp] 97 / 7e-23 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10039331 [exp] 94 / 2e-21 AT4G11070 174 / 1e-51 WRKY family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109100 [exp] 168 / 2e-49 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 157 / 2e-45 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 133 / 4e-36 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.012G031700 [exp] 99 / 2e-23 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.003G138600 [exp] 98 / 5e-23 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.002G168700 [exp] 93 / 3e-21 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.001G092900 [exp] 93 / 4e-21 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 90 / 5e-20 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.005G086400 [exp] 70 / 9e-14 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.013G090400 [exp] 71 / 2e-13 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10025216 pacid=23157333 polypeptide=Lus10025216 locus=Lus10025216.g ID=Lus10025216.BGIv1.0 annot-version=v1.0 ATGGAGATCATTAGTCCGGCGCCGCTTAATCGGAAGAACAACAACGCAATCCACGAGATCCTCCGTGGACGGGACTTCACTTGCCAGCTCAGGCAGCTCC TCCTCTCTACTTATAAATCCGGCGGATCTTCTTCTTCTGCTGCTGAATATCTGGTGGCCAAGATCTTAACATCCTTCACTCACACTCTCTCAATCTTGAA CAGTAATAATGCCGACTACTCCAGCGCCGACGAGGTCTCTCAGTGTTTGGATGCTCCCAAGTCGGAGATCTCCTCCGGCGACAGTACTAGTTATGATAAG ATAAGCTCGTCTACCATGGATGACCGCAGGGGATGCTACAAGCGAAGGAAGACAACATCGTCGGATTCGTGGGTAAACGAGGCAGAAACGCTGGTGGACG ACGGGCACCAGTGGAGGAAGTACGGCCAGAAAACCATCCTGAGATCCGAGTTCCCGAGACACTACTACAGATGCACACACAAAAACGACCAGAAGTGCAA AGCCACAAAGCAAGTTCAGATGGTACAATCCCACCCTAAACCCATGTACCGCACCACATACTACTCCCACCATACCTGCACCAATCCCATGAACCACTTC TTCCTCGATCCTCCCTCTAACGACGTCCGCCTCATCAGCTTCAGAAACAATAATAATACAGCTGGCACTAGCAGCATCAAAGGAGGGCAGCATGACAGCA TGATGTTCAGTAGTACCCCTTTCCTGGCATCGTTTTCCACGTCATCATCACCACCCTCTACTTCTGAAACAGTGTTTAAACAGGAATCGAGCTTAGTGGA TGATGCCAATGTAGTAAGCGATGTTGGAAGACAAGGTGGTGGCGGTGGTGGTGGTCAAACCGAAAACCAATCTGACGTGGACGACGATGATGAAGATCAT GATGATTATTACCAAAGCGAAAGTGGTTACATGCGGATGTTGATGGACCCTCCCACTGTCGACCAAGGGTGGTTTTCTGACTTGAAGTCTCGATCGATGT AG
AA sequence Show only first row Show all	>Lus10025216 pacid=23157333 polypeptide=Lus10025216 locus=Lus10025216.g ID=Lus10025216.BGIv1.0 annot-version=v1.0 MEIISPAPLNRKNNNAIHEILRGRDFTCQLRQLLLSTYKSGGSSSSAAEYLVAKILTSFTHTLSILNSNNADYSSADEVSQCLDAPKSEISSGDSTSYDK ISSSTMDDRRGCYKRRKTTSSDSWVNEAETLVDDGHQWRKYGQKTILRSEFPRHYYRCTHKNDQKCKATKQVQMVQSHPKPMYRTTYYSHHTCTNPMNHF FLDPPSNDVRLISFRNNNNTAGTSSIKGGQHDSMMFSSTPFLASFSTSSSPPSTSETVFKQESSLVDDANVVSDVGRQGGGGGGGQTENQSDVDDDDEDH DDYYQSESGYMRMLMDPPTVDQGWFSDLKSRSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025216 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	1.0	0.9548
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	1.7	0.8715
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	3.9	0.8658
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	4.7	0.8774
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	5.7	0.8477
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	7.3	0.8536
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10022572 [exp]	8.2	0.8674
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10005813 [exp]	8.8	0.8429
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	8.8	0.8644
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	9.9	0.8600

Compare expression of checked genes

Lus10025216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.