Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43180 157 / 2e-47 Protein of unknown function, DUF599 (.1) AT5G10580 96 / 1e-23 Protein of unknown function, DUF599 (.1.2) AT4G31330 89 / 4e-21 Protein of unknown function, DUF599 (.1) AT5G24790 76 / 2e-16 Protein of unknown function, DUF599 (.1) AT5G24600 76 / 2e-16 Protein of unknown function, DUF599 (.1.2) AT3G18215 66 / 7e-13 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025134 [exp] 369 / 4e-131 AT5G43180 184 / 5e-58 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 89 / 3e-21 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10032916 [exp] 71 / 3e-14 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10015590 [exp] 69 / 6e-14 AT5G24600 291 / 2e-99 Protein of unknown function, DUF599 (.1.2) Lus10020172 [exp] 67 / 2e-13 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1) Lus10013947 [exp] 65 / 3e-12 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 64 / 7e-12 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10005272 [exp] 63 / 2e-11 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10009640 [exp] 45 / 1e-05 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137800 [exp] 178 / 8e-56 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1) Potri.006G278000 [exp] 87 / 1e-20 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.015G001500 [exp] 70 / 2e-14 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.015G001300 [exp] 66 / 9e-13 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.011G059400 [exp] 55 / 5e-09 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 44 / 3e-05 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10025217 pacid=23157368 polypeptide=Lus10025217 locus=Lus10025217.g ID=Lus10025217.BGIv1.0 annot-version=v1.0 ATGGTGAGTCTGTACGATCTGGAAACTTTATTAGTCACCTTGAGCGTCTTCGTATTGGTTGGTTACCATTGCTGCCTCTGGTACTTCTTCAACCACAGAC CTTCCCACACCACTCCTGGGATCCACGCCTTGATGCGCAAGCAATGGATGATCGCCATTAAGCAGGGGGACGAGAAGAAGGAAATGCTAGCGGTACAGAG CCTGAGGAACACTCAGATGACTACAATCTTCACCGCCACGGTGGCAATCCTAATCAACACGGCGCTGCCAGCTATGACCAACAACGTCTATACGACAAGC CGACAGCTGCCGATGATGTGGTCCCCGCTGTGGGGGTCCCAGCAGTCCGGGAGGATCACGGTGCTCAAGTACGGCTCTGTTTCGCTGTCTCTGCTGTCTA GCTACCTATGCAGCTCGTTGGGACTCGGGTACATGATGGACGCAAATTTCTTGGTAAACGCTACTGTTTTGGCCTCCGGGCGCGGTGGCGGCGGGTCGAG GAAGTGGGCGGCGGAACACACGGAGAGGGTGATGGAGAGAGGGTTCAGATTGGGGGAATTGGGAAATAGGATTCTGTGCATCAGCTTCCCGTTGCTGGCG TGGTTGTTGGGTCCGATTCCATTGGCGATTTCCACGTTTTGTATGGTTTGGATTCTGTATTCTCTTGATTTCCGATCCGTGACATCTTTTTGA
AA sequence Show only first row Show all	>Lus10025217 pacid=23157368 polypeptide=Lus10025217 locus=Lus10025217.g ID=Lus10025217.BGIv1.0 annot-version=v1.0 MVSLYDLETLLVTLSVFVLVGYHCCLWYFFNHRPSHTTPGIHALMRKQWMIAIKQGDEKKEMLAVQSLRNTQMTTIFTATVAILINTALPAMTNNVYTTS RQLPMMWSPLWGSQQSGRITVLKYGSVSLSLLSSYLCSSLGLGYMMDANFLVNATVLASGRGGGGSRKWAAEHTERVMERGFRLGELGNRILCISFPLLA WLLGPIPLAISTFCMVWILYSLDFRSVTSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	0	1
AT3G14280			unknown protein		Lus10037453 [exp]	1.0	0.8923
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10026667 [exp]	1.4	0.8413
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	4.6	0.8240
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Lus10012962 [exp]	6.0	0.8091
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	6.7	0.7922
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10026504 [exp]	7.0	0.7775
AT2G37180		PIP2C, PIP2;3, ...	RESPONSIVE TO DESICCATION 28, ...		Lus10026505 [exp]	7.5	0.7639
AT3G07720			Galactose oxidase/kelch repeat...		Lus10006392 [exp]	13.3	0.7686
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	14.4	0.7602
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	15.2	0.7743

Compare expression of checked genes

Lus10025217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.