Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61670 299 / 2e-99 Lung seven transmembrane receptor family protein (.1) AT1G10980 241 / 8e-77 Lung seven transmembrane receptor family protein (.1) AT1G72480 178 / 5e-53 Lung seven transmembrane receptor family protein (.1) AT2G01070 164 / 7e-48 Lung seven transmembrane receptor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025135 [exp] 469 / 1e-167 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10030521 [exp] 266 / 4e-86 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 265 / 5e-86 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008125 [exp] 194 / 1e-58 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 191 / 1e-57 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 186 / 1e-55 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10005732 [exp] 181 / 6e-54 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109000 [exp] 314 / 1e-105 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 313 / 3e-105 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 189 / 4e-57 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 187 / 2e-56 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 132 / 6e-36 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10025218 pacid=23157421 polypeptide=Lus10025218 locus=Lus10025218.g ID=Lus10025218.BGIv1.0 annot-version=v1.0 ATGGAGGAAGGTGAATTCTGGAAGTTAGGGTTTATCTTCTCGTCGTTGATCATCATCAACTCCCAGTTCGCGAGTGTCAGTGCATCGATTCACGAGTATA CCAACGAAGCCTTCATTTCGCAGCCAGATGCCTTCTTCTTCCACGGCGGCAGCGAAGGCCTCTATGCTTCTAAGGTTCACGATTCTTCCGCTGCTTCTAA CGAAAACCACCTTAAAGGAAAGTCATTCATCAGGTTTGAGGATGTCACCTTTGTGAGAACGAAAGAGGCTGCCAGTAAACAGCACGCGATGCAGCAGAAT ACTGGATTGGTGGAAGCAATTGTACTGGAGGTTAAGGATAGGGAAAGGATTGGAGGTGGATTTCTGAAGACCGATGTGATCTGCTGTAATCCTACTCTTG CTGGCACGGGAGCCTGCAAGCTAGGTGAGGTGATTATCCAGAAAAACTCGGAGAACCCCGAGTGGCCCAAGCGCATTCAGACTTCGTTTGCTGGACAGAG TGAGGAAGTTAAAATGCAACCTGAAATGGTTGAAATCAATAGTACTGGAATGTATTACCTCTATTTTATGTTTTGTGATCCGCAACTGGAGGGGACCTTG ATTAAGGGGAGGACTGTTTGGAAGAACCCAAATGGTTATTTGCCTGGCAAGATGACACCTCTCATGACATTCTATGGAATCATGTCTCTAGCTTACCTAG GGCTAGGACTACTCTTACAGTGA
AA sequence Show only first row Show all	>Lus10025218 pacid=23157421 polypeptide=Lus10025218 locus=Lus10025218.g ID=Lus10025218.BGIv1.0 annot-version=v1.0 MEEGEFWKLGFIFSSLIIINSQFASVSASIHEYTNEAFISQPDAFFFHGGSEGLYASKVHDSSAASNENHLKGKSFIRFEDVTFVRTKEAASKQHAMQQN TGLVEAIVLEVKDRERIGGGFLKTDVICCNPTLAGTGACKLGEVIIQKNSENPEWPKRIQTSFAGQSEEVKMQPEMVEINSTGMYYLYFMFCDPQLEGTL IKGRTVWKNPNGYLPGKMTPLMTFYGIMSLAYLGLGLLLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61670			Lung seven transmembrane recep...		Lus10025218 [exp]	0	1
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	11.8	0.8958
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	28.5	0.8727
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	61.5	0.8462
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	65.1	0.8411
					Lus10007977 [exp]	77.4	0.8464
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	94.0	0.8372
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10039565 [exp]	95.8	0.8135
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	97.7	0.8067
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	106.1	0.7950
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10001384 [exp]	150.7	0.8258

Compare expression of checked genes

Lus10025218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.