Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61670 284 / 2e-94 Lung seven transmembrane receptor family protein (.1) AT2G01070 223 / 1e-70 Lung seven transmembrane receptor family protein (.1.2) AT1G72480 213 / 1e-66 Lung seven transmembrane receptor family protein (.1) AT1G10980 136 / 1e-37 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030521 [exp] 245 / 7e-79 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 243 / 3e-78 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 212 / 3e-66 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10005732 [exp] 212 / 3e-66 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10008125 [exp] 208 / 9e-65 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 207 / 2e-64 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025135 [exp] 164 / 7e-49 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109000 [exp] 310 / 2e-104 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 292 / 2e-97 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 218 / 2e-68 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 217 / 2e-68 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Potri.001G166500 [exp] 217 / 2e-68 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10025219 pacid=23157427 polypeptide=Lus10025219 locus=Lus10025219.g ID=Lus10025219.BGIv1.0 annot-version=v1.0 ATGGGGTTTGGTGTTGTACGCCCTACACTTGGTGGTATAACATCCAGAGTTCTTCTTCTTGGGTTGTTCTACTTCATTGCTTGTGAGGCTCTTGAGCTCG TTGAACATCTGGGCAACATCAATGACTTCTCTAAGAAAACAGAATTATTTCTCGTGCTTCCTGTTGCTTTTCTAGATTCATGCTTTATTCTCTGGATCTT TTCATCTTTGTCAAAAACTTTGGAGAAGCTTCAGATGAGAAGAAACTTGGCAAAGCTGGACCTTTACAGGAAGTTCACCAATGCTCTTGCAATATCTGTG TTGCTTTCCATTGCCTGGATTGGCTTTGAGCTTTACTTCAATGCAACGGATCCACTTAGCGAGATGTGGAAAATTGGGTGGATAATTCCTGCTTTCTGGA CTCTTTTAGCATTCTTTGTATTGGTGGTCATATGCCTCTTGTGGGCTCCTTCACGCAACCCAACAAGATACGCATACATGGAGGAGATAGGAGACGAGTT TGACGAAGAAGGGATCTCATTGACAAGCGGCGGACTGAAAGCAACTGTGGATCCAAAGCTGGAGAGAATGGCGGCAGGAGAAGATGTTGAGGAAGACAAG CGAGAGTAG
AA sequence Show only first row Show all	>Lus10025219 pacid=23157427 polypeptide=Lus10025219 locus=Lus10025219.g ID=Lus10025219.BGIv1.0 annot-version=v1.0 MGFGVVRPTLGGITSRVLLLGLFYFIACEALELVEHLGNINDFSKKTELFLVLPVAFLDSCFILWIFSSLSKTLEKLQMRRNLAKLDLYRKFTNALAISV LLSIAWIGFELYFNATDPLSEMWKIGWIIPAFWTLLAFFVLVVICLLWAPSRNPTRYAYMEEIGDEFDEEGISLTSGGLKATVDPKLERMAAGEDVEEDK RE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61670			Lung seven transmembrane recep...		Lus10025219 [exp]	0	1
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	3.5	0.8739
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	5.7	0.8766
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	9.8	0.8445
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	13.7	0.8672
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10037660 [exp]	16.1	0.8583
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	16.4	0.8433
AT5G58920			unknown protein		Lus10040699 [exp]	18.2	0.8263
AT3G61113			Ubiquitin related modifier 1 (...		Lus10036551 [exp]	19.7	0.8424
AT5G22875			unknown protein		Lus10037369 [exp]	21.4	0.8114
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	21.9	0.8269

Compare expression of checked genes

Lus10025219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.