Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025138 [exp] 151 / 1e-47 ND 40 / 5e-04 Lus10013353 [exp] 39 / 0.0005 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10025222 pacid=23157408 polypeptide=Lus10025222 locus=Lus10025222.g ID=Lus10025222.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCTCCCAAGAATCCTCTCAGCTGCATGAGCCTACAGACCTGTACGGAGGGCCTCGGATCCGAGTCCGGATACGATGGGTCATACTCCTACC CGCCTCATGCTCGCTATCATCCTGTACAGCATGACGATGGCGGGGAAGAGAACGGAGCACCTGACCACCAGCTTCTGGCGAAGATGGCGAGTTTCCCAAC TGGAGACGGCGATGGGGGCCGCAGAAGCAGCGAGGAGAATGAGTCGGTTAAGAGGCCGGCGGGGTTTCCTCCGCCGATTTCTACTCTGGCTCGCGGCGGA AACCGTCCCGGCGAAGTCGGGAGGGGGAGCTTCCAAATGCGGCGGTATCGGAACGGCGGGAGATTGGTTGTGGAAGTGGTGTTGGATAAGAAGATGAAGC AGTTATAA
AA sequence Show only first row Show all	>Lus10025222 pacid=23157408 polypeptide=Lus10025222 locus=Lus10025222.g ID=Lus10025222.BGIv1.0 annot-version=v1.0 MSSPPKNPLSCMSLQTCTEGLGSESGYDGSYSYPPHARYHPVQHDDGGEENGAPDHQLLAKMASFPTGDGDGGRRSSEENESVKRPAGFPPPISTLARGG NRPGEVGRGSFQMRRYRNGGRLVVEVVLDKKMKQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025222 [exp]	0	1
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Lus10011649 [exp]	12.0	0.6332
AT2G36885			unknown protein		Lus10026542 [exp]	25.2	0.6805
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	29.6	0.6624
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	36.6	0.6000
					Lus10005902 [exp]	54.7	0.5879
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	76.2	0.5878
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	150.7	0.5398
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	178.2	0.5030
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	187.2	0.5306
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10026511 [exp]	195.1	0.5041

Compare expression of checked genes

Lus10025222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.