Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51580 142 / 9e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025140 [exp] 529 / 0 AT3G51580 154 / 3e-43 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136900 [exp] 231 / 6e-73 AT3G51580 171 / 2e-49 unknown protein Potri.006G108400 [exp] 229 / 1e-72 AT3G51580 166 / 6e-48 unknown protein Potri.019G058400 [exp] 105 / 6e-26 AT3G51580 59 / 7e-10 unknown protein Potri.001G092300 [exp] 62 / 2e-10 AT1G64385 162 / 2e-46 unknown protein Potri.003G139400 [exp] 56 / 1e-08 AT1G64385 189 / 5e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025224 pacid=23157429 polypeptide=Lus10025224 locus=Lus10025224.g ID=Lus10025224.BGIv1.0 annot-version=v1.0 ATGGGGTGGAAATGGAATAGAGTTGTTGCAGCAATACTTCTGGTGTTTATCGCTGCCGATGTTTCCAACGCGTCCGGGCTCTCCAGCTTCCGGAAGAAGT TGGCTGGTGTGGTGACTCCTCCTCAGGACTCAGGCGGAGCTCAAGGCTCTCCGACGCCGAGTCCGAATCCTGTGAATACTACATCCAATAACTTGACAAC TGTAAACAATCCGACGAAGGAAAACCCGGTGGCCACAATGACAGTAGATAGTTCAACCACGAAAAATCCTGCACCGGCAGATACTACTGCTGGCGTTCCC GTTGACAAAGAAAAGGTTGCTCAACCTCCAGTAAGCGCTCTAGGAGCTGAGAAGGGTGGGGAGAAGGACGAAGGAACGAAGAAGACGGATACAGATAATA AAACAGTACCCCAGCAGCAGCTGGAGGCTGGAGAAAATTGTACAGGGTTACCAAGGAGGTGCACTGACCAGAATTCCTTGACTGCCTGCTATCTACGGTT TGATGAGGTATCAAGGAAATTTGTGGTATTAATCCAGAATAACGGAGAACAGAATTTGAGTGTGGCTCTTTCTGCACCAAATACACTGGATGACGCATCA ATTCAGATAGCAAAACATGAAAGTAAAAAGATTAATTTACAAGTTGGAACGAGCGAAGTAGTAAGTTTGAATGCTGGGAATGGGGTATGTGTTCTGCACA TGGATCCTGGTTTGGTACAGAGTCAGGGAAACTATGTCTTCCGTCTCCCTTCTTACGACCAGCTACTTACCCCTGTCAATGGTGCGTACTTACTGATCCT TACAGTGGTACTGTTCGGGGTAATGTGGGCTTGTTGCTGCTTGTTTAGAAAAAGCAGAGTACAAGGTGAAGTGCCTTATCAAGAGCTCGAATTGGCTGCT CCAAACAATGAGTTGCCTAATGATCTGGAAACAGCAGAAGGCTGGGACGAAGGCTGGGACGATGACTGGAATGACGACTTATCTGTTAAGTCTCCAGCAG CACATGCAGGGAGCATTTCTGCCAATGGCCTTACTGCTAGGTCTTCAAACAGAGACTCGTGGGAGAAGAACTGGGATGACTAG
AA sequence Show only first row Show all	>Lus10025224 pacid=23157429 polypeptide=Lus10025224 locus=Lus10025224.g ID=Lus10025224.BGIv1.0 annot-version=v1.0 MGWKWNRVVAAILLVFIAADVSNASGLSSFRKKLAGVVTPPQDSGGAQGSPTPSPNPVNTTSNNLTTVNNPTKENPVATMTVDSSTTKNPAPADTTAGVP VDKEKVAQPPVSALGAEKGGEKDEGTKKTDTDNKTVPQQQLEAGENCTGLPRRCTDQNSLTACYLRFDEVSRKFVVLIQNNGEQNLSVALSAPNTLDDAS IQIAKHESKKINLQVGTSEVVSLNAGNGVCVLHMDPGLVQSQGNYVFRLPSYDQLLTPVNGAYLLILTVVLFGVMWACCCLFRKSRVQGEVPYQELELAA PNNELPNDLETAEGWDEGWDDDWNDDLSVKSPAAHAGSISANGLTARSSNRDSWEKNWDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51580			unknown protein		Lus10025224 [exp]	0	1
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	1.4	0.8321
AT3G51580			unknown protein		Lus10025140 [exp]	1.4	0.8630
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Lus10024466 [exp]	5.5	0.7865
AT5G35080			unknown protein		Lus10008819 [exp]	5.7	0.8307
AT5G03490			UDP-Glycosyltransferase superf...		Lus10036840 [exp]	8.7	0.7330
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	9.2	0.8089
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	10.2	0.7931
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	10.5	0.7791
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018281 [exp]	13.0	0.7147
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	14.1	0.7870

Compare expression of checked genes

Lus10025224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.