Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 787 / 0 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 675 / 0 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 294 / 4e-87 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT3G26790 95 / 7e-21 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G13260 81 / 6e-16 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G28300 79 / 3e-15 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 80 / 5e-15 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT2G36080 74 / 8e-15 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT1G68840 76 / 2e-14 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT4G01500 76 / 2e-14 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025142 [exp] 1683 / 0 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 1019 / 0 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10018440 [exp] 460 / 2e-146 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10014169 [exp] 400 / 2e-127 AT4G21550 237 / 4e-68 VP1/ABI3-like 3 (.1) Lus10011245 [exp] 303 / 8e-87 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10041521 [exp] 96 / 5e-21 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 92 / 8e-20 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 81 / 8e-16 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 78 / 3e-15 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136500 [exp] 1240 / 0 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.006G108300 [exp] 1225 / 0 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.019G130300 [exp] 864 / 0 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 842 / 0 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.004G035300 [exp] 606 / 0 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 516 / 4e-169 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.017G061200 [exp] 105 / 1e-24 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 100 / 8e-23 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.016G074500 [exp] 82 / 2e-16 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.006G208100 [exp] 82 / 3e-16 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025226 pacid=23157314 polypeptide=Lus10025226 locus=Lus10025226.g ID=Lus10025226.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAGACTTGCATGAATGCATTATGCGGCGCATCCACGTCGAGCGGTTGGAGAAATGGCTGGGGGCTGCGATCTGGAGAATTCGCTCATCTCT GCGATAAGTGCGGCTCGGCATACGAGCAGTCAATATTTTGTGAAGTATTTCACTCTAAGGATTCCGGCTGGAGGGAGTGCAGTTCTTGTGGCAAGCGTCT TCATTGTGGTTGCATTGCTTCTAGGCTTCTCCTTGAGCTCCTTGATGGGGGTGGCATAAACTGCATAACCTGTGCTAGAAGTTCTGGATTGATTTCTATT GGCGCCAATAGGAAACCTAATGGATTTACCAAATCAAGAATTGATGACATCATGGAAATGCAATCTATATCTGTTGAGAATGGGATGGATGTAGACAGAA GTCTCTTGCAGTTAGGCAACAACACTGAAAGTATTGGTGCTAGACAGTTGCTTCAATTGCATGGTGATGACACCAAAGCATCTTTTAGACAGATGAAGCA AGAAGCTATGTTGTCTCCTCATATTGGCGAAATTGGAGGCACAAGTTTCTCGCATTTTAATCAAATGTCAAATACATTTTCTCAAGCTGCCAAACCAGAG ATCAACAGAGCAACTATGGGGCCGAAAGATTTATATGATTCACTGGCAAATACGAACTTGACTATTGCACTTGGTTCTTCTTTAGGGAGCCCGACTCCCT TTGGATCTACTGTTGATGAAAGAGCAGGAAGTAAGACGCCTCCTCTTCAGGGATCAAGGTCTCGCCACCTATTGCCCAAGCCCCCGAAGTCAAATCTTGT GACAGGATTGGAGCCGAATAATGTCATGTGCTCGCCAATACGTGTTGCCAGGCCACCTGCTGAAGGACGGGGAAGAAATCAGTTGCTACCTCGTTATTGG CCTAGGATTACCGACCAAGAACTTCAGCAGATCTCTATGGAGTATCCTTACTCTCTTAGTGCTAATAATTCAAATTCCACTATTGTGCCTTTGTTTGAAA AGGTTCTCAGTGCAAGTGATGCTGGTCGTATAGGCCGTTTGGTCCTCCCTAAAGCTTGTGCTGAAGCATATTTTCCACCCATCTCTCAGCCAGAAGGCAT TCCACTTAGGATTCAAGATGTGAAGGGGAAAGAGTGGGTGTTTCAGTTCAGATTTTGGCCGAATAATAATAGCAGGATGTATGTTTTGGAAGGTGTAACC CCTTGCATACAGTCTATGCAGTTGCAAGCTGGAGATACTGTGACATTCAGTCGTATGGACCCAGAGGGGAAACTTGTTATGGGATTTAGGAAAGCTTCAA ATTCATTTGCTATGCAGGACATTCAACGTTCTCCCATTCCTAATGGTGTTCATTCAAGTGAAAGTTCCTTTTCCGGTGTTTTTGAGAACCTACCTGTAAC AAGTGGTTGCTGTGGCCTTCTTCAGTCTCTGAAGGGAAGCAATGATGCACACTTAAGTGCGCTGTCAAAACATTTGCAGTCAGTAGGTGATATTAGTTGG AATAAAACTGAGAACCAGGAGGATAGGACTCAGGAAGGGTTGATGCTGCCATCAATGCTAATTACCGAGAGGAAAAAGGCAAAGAACATCGGATCCAAAA ATAAAAGGCTTCTAATGGACGGCCAAGAGGCTTTGGAGCTGAAGCTTACCTGGGAAGAAGCACAAGATTTGCTGCGCCCACCCCCAACTGCCAAACCTAG CATCGTCACCATTGAGGACTACGATTTTGAAGAATATGATGAGCCTCCTGTTTTTGGGAAGACAAGTATATTCATAGCTCGTTCAACTGGAACACAGGAG CAATGGGCTCAGTGTGATGGCTGCTCGAAATGGCGGAAGTTGCCTGTTGATTTTCTTCTTCCACCCCAGTGGACATGCAGAGAGAATGCTTGGGATCAAA ACAGGAATTCATGCTCTGCTCCAGATGAGTTGACCCCAAGGGAATTAGAAAATCTCCTCAGAAAGAATAAGGATTTCAAGAAGCGGAGAGTTACAAGCAG CAAGGGAGCAGCCCAGGAGGCTGAACCATCAGGGCTTGATGCTTTGGCTAATGCAGCAATCCTTGGAGACATGGGAGAGCCAGGCCCCTCTGCTGCCGTT GCAACAACAACAAAGCATCCCAGGCATCGCCCAGGTTGCTCTTGCATTGTGTGCATCCAGCCCCCTAGTGGGAAAGGCAAGCACAAGCCGACATGCACCT GTAATGTCTGCATGACAGTGAAACGCCGGTTCAAAACCCTAATGATGCGGAAGAAGAAGCGCCAGTCTGACCGTGAAGCAGAGATTGCCCAGAGGAATCA CCAGCTGTGGGGTGGGTCCAAAGATGAAGCAGAAACAGAAAGTAGTTCAAAGGCCGAGTTATCTACTGCACGGATAGATCCTGTAGAGAATGAAGCAACA ATGGTGGCAAATGAGTTGGAAAGGACCAAAAGCTTAAGCAACAAATTAGCAGAGAAATGGGTTGATATCGGGAAGGGACATATAGACCTGAATTGCCATC CGGATCGTGAAGAAGACACCCAAGCAGGCGGCGTCTTGAATCTTCTTCAAGTGGCGAGATTTCCGCTGGAGTCGTTTCTGAATCAGAATAGGTTAGTAGG GAACTTGGCGTCTGGGAAAGGAGGTTCAACATCTCATTTGCCTGCTATTGCTGTTGCTGCTGCTACTCCACAAGAAGGTGGCGGTGGTGACGGTGAAGAA CAACAAGTTGCGGAGGATTGCAAATTGGATTCAGCTGTTGAAGATGGGAAAGAGAATAACAAAGATGAAGCAGAAGAAACCCAGAAAGCAACATTGTGA
AA sequence Show only first row Show all	>Lus10025226 pacid=23157314 polypeptide=Lus10025226 locus=Lus10025226.g ID=Lus10025226.BGIv1.0 annot-version=v1.0 MASKTCMNALCGASTSSGWRNGWGLRSGEFAHLCDKCGSAYEQSIFCEVFHSKDSGWRECSSCGKRLHCGCIASRLLLELLDGGGINCITCARSSGLISI GANRKPNGFTKSRIDDIMEMQSISVENGMDVDRSLLQLGNNTESIGARQLLQLHGDDTKASFRQMKQEAMLSPHIGEIGGTSFSHFNQMSNTFSQAAKPE INRATMGPKDLYDSLANTNLTIALGSSLGSPTPFGSTVDERAGSKTPPLQGSRSRHLLPKPPKSNLVTGLEPNNVMCSPIRVARPPAEGRGRNQLLPRYW PRITDQELQQISMEYPYSLSANNSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGIPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVT PCIQSMQLQAGDTVTFSRMDPEGKLVMGFRKASNSFAMQDIQRSPIPNGVHSSESSFSGVFENLPVTSGCCGLLQSLKGSNDAHLSALSKHLQSVGDISW NKTENQEDRTQEGLMLPSMLITERKKAKNIGSKNKRLLMDGQEALELKLTWEEAQDLLRPPPTAKPSIVTIEDYDFEEYDEPPVFGKTSIFIARSTGTQE QWAQCDGCSKWRKLPVDFLLPPQWTCRENAWDQNRNSCSAPDELTPRELENLLRKNKDFKKRRVTSSKGAAQEAEPSGLDALANAAILGDMGEPGPSAAV ATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSDREAEIAQRNHQLWGGSKDEAETESSSKAELSTARIDPVENEAT MVANELERTKSLSNKLAEKWVDIGKGHIDLNCHPDREEDTQAGGVLNLLQVARFPLESFLNQNRLVGNLASGKGGSTSHLPAIAVAAATPQEGGGGDGEE QQVAEDCKLDSAVEDGKENNKDEAEETQKATL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	2.0	0.8135
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	3.9	0.7867
AT2G39130			Transmembrane amino acid trans...		Lus10037974 [exp]	4.4	0.7673
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	5.3	0.7999
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	7.7	0.7867
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	7.9	0.7931
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	8.0	0.7819
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10006989 [exp]	12.2	0.7513
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	12.4	0.7815
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	13.4	0.7808

Compare expression of checked genes

Lus10025226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.