Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025143 [exp] 179 / 4e-56 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136300 [exp] 60 / 3e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025227 pacid=23157400 polypeptide=Lus10025227 locus=Lus10025227.g ID=Lus10025227.BGIv1.0 annot-version=v1.0 ATGGCAAAGAACCCAGAAACAAAGATTCCACTCAATCGCCGCCAGGGCAAGACCGACAAGGACACAAACGATCTGGGTGTGCTGATAGTTAGATCGGTGG AATCATTGTCCCAATCAATAGAGCAGAGGAGTGGAAGGGGGATATTGATCCATGGGACTAGTGTGGTTCTGTTTGCGTTTCTTCTGTGGATGGAACGTTT GAGTAGTAAGGCGAGGAGTTTGGTGGTGTTTGTAGCTTTGGCAGTGGTCGGTTTGGGAGTGGCATTGCGAGTGAGTGAGAATGTGGGATCTGATCAAGCC GCTGTTTGGGAAGCTTGGAGATATGTTGTGTCTTCTGGTCGTGTAGATGAGCTTGCCCAGGTACGGGCGGCACTAAGTGGTGGAGAACTGACTGAAGAGT CTGAATTTGCTTGGTTTGGTTTCTTATTTTGTTTGTGGATTTGTTTCAGGTTATCTTCTATAGGGTTTGGGACTTCTTAG
AA sequence Show only first row Show all	>Lus10025227 pacid=23157400 polypeptide=Lus10025227 locus=Lus10025227.g ID=Lus10025227.BGIv1.0 annot-version=v1.0 MAKNPETKIPLNRRQGKTDKDTNDLGVLIVRSVESLSQSIEQRSGRGILIHGTSVVLFAFLLWMERLSSKARSLVVFVALAVVGLGVALRVSENVGSDQA AVWEAWRYVVSSGRVDELAQVRAALSGGELTEESEFAWFGFLFCLWICFRLSSIGFGTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025227 [exp]	0	1
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	3.0	0.8547
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	8.9	0.8216
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	10.5	0.8173
AT4G22950	MADS	AGL19	AGAMOUS-like 19 (.1)		Lus10006715 [exp]	13.6	0.8311
AT5G40500			unknown protein		Lus10002519 [exp]	13.6	0.8355
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	15.7	0.7932
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	19.8	0.7987
AT5G19940			Plastid-lipid associated prote...		Lus10042448 [exp]	21.4	0.8340
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	21.7	0.8325
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	21.9	0.8393

Compare expression of checked genes

Lus10025227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.