Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01880 97 / 5e-26 RING/U-box superfamily protein (.1) AT3G10910 87 / 5e-22 RING/U-box superfamily protein (.1) AT5G05280 85 / 3e-21 RING/U-box superfamily protein (.1) AT1G72310 84 / 6e-20 ATL3 RING/U-box superfamily protein (.1) AT4G17905 79 / 3e-18 ATL4H RING/U-box superfamily protein (.1) AT3G18773 77 / 4e-18 RING/U-box superfamily protein (.1) AT1G49230 77 / 4e-18 RING/U-box superfamily protein (.1) AT2G17450 76 / 8e-18 RHA3A RING-H2 finger A3A (.1) AT1G76410 76 / 1e-17 ATL8 RING/U-box superfamily protein (.1) AT1G49210 76 / 2e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025145 [exp] 222 / 1e-75 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10025144 [exp] 146 / 1e-45 AT5G01880 87 / 5e-22 RING/U-box superfamily protein (.1) Lus10025146 [exp] 100 / 1e-27 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10036380 [exp] 97 / 5e-26 AT5G05280 96 / 2e-25 RING/U-box superfamily protein (.1) Lus10022743 [exp] 93 / 2e-24 AT3G10910 154 / 5e-48 RING/U-box superfamily protein (.1) Lus10029037 [exp] 87 / 6e-22 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10005818 [exp] 84 / 3e-21 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1) Lus10005816 [exp] 84 / 1e-20 AT1G49230 169 / 5e-53 RING/U-box superfamily protein (.1) Lus10005814 [exp] 84 / 2e-20 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136200 [exp] 97 / 5e-26 AT3G10910 144 / 8e-44 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 92 / 5e-24 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.003G075200 [exp] 86 / 7e-22 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.001G159300 [exp] 85 / 2e-21 AT5G05280 134 / 3e-40 RING/U-box superfamily protein (.1) Potri.019G057700 [exp] 85 / 3e-21 AT3G10910 157 / 6e-49 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 83 / 2e-20 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1) Potri.019G010500 [exp] 83 / 3e-20 AT1G49230 260 / 2e-88 RING/U-box superfamily protein (.1) Potri.001G309600 [exp] 83 / 4e-20 AT1G49230 261 / 6e-89 RING/U-box superfamily protein (.1) Potri.007G064401 [exp] 82 / 4e-20 AT1G20823 118 / 2e-33 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 80 / 2e-19 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025228 pacid=23157334 polypeptide=Lus10025228 locus=Lus10025228.g ID=Lus10025228.BGIv1.0 annot-version=v1.0 ATGACACGAATCCACGCATGGCCCGGTGAGTCCGAGGAAGCCGCTCGAGTCGCTTGGGAGCAGGCGTATCTCCGGAAACACTGGAGGACGGTACTGGTTG AGGTGCTCGTCTGTCTCGTGATTTTTGCTGGGGTGTTCTTCATCAAGCACTGCGTGAAGAAATGTCGGAAGAAGCATTGTGTGAGGCGGCAGATCCGGGT CGCCGCTCACGGGTCGGGTCCTCCCGCCCGGGTGGTGGTGGTGAGTGGTGAGTGCTCCATTTGTTTGGGGGAGTTCTTGGACGGGGAGAGGGTTCGGGTG CTGCCCAAGTGCAATCACGAGTTTCATGTTTTGTGCATCGACAAGTGGCTTGCGTCGCACTCTTCCTGCCCCAACTGTCGCCATTCAGTCGTCGGCGGCG AGCTTCAGAGGCTCCCGGAGAATATTGTTCGGCAAGGGTTGACGACTTAA
AA sequence Show only first row Show all	>Lus10025228 pacid=23157334 polypeptide=Lus10025228 locus=Lus10025228.g ID=Lus10025228.BGIv1.0 annot-version=v1.0 MTRIHAWPGESEEAARVAWEQAYLRKHWRTVLVEVLVCLVIFAGVFFIKHCVKKCRKKHCVRRQIRVAAHGSGPPARVVVVSGECSICLGEFLDGERVRV LPKCNHEFHVLCIDKWLASHSSCPNCRHSVVGGELQRLPENIVRQGLTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01880			RING/U-box superfamily protein...		Lus10025228 [exp]	0	1
AT4G31140			O-Glycosyl hydrolases family 1...		Lus10024535 [exp]	1.0	0.8627
AT5G67420	AS2	ASL39, LBD37	ASYMMETRIC LEAVES2-LIKE 39, LO...		Lus10018697 [exp]	3.9	0.7455
AT1G62760			Plant invertase/pectin methyle...		Lus10028910 [exp]	6.9	0.7779
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	10.1	0.7974
					Lus10000914 [exp]	10.6	0.7358
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	11.2	0.7358
AT5G47740			Adenine nucleotide alpha hydro...		Lus10019487 [exp]	11.8	0.7386
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	13.1	0.7937
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	14.7	0.7253
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	15.7	0.7167

Compare expression of checked genes

Lus10025228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.