Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025147 [exp] 237 / 7e-78 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025229 pacid=23157397 polypeptide=Lus10025229 locus=Lus10025229.g ID=Lus10025229.BGIv1.0 annot-version=v1.0 ATGAGAAGATCAACTCGAAGATCTATTTCCGTTGCTGCTCCGTCTGAAGATGAAGTCCGAAGCATTGATTTAAAAAAAGAAGATGAAGTCCGAAGCTCGG ATACTGATGATGAAACTGATCTGGATGCCGATACAAGAGAAGCAGTAGCCACAGAACATTCTAGTTTGCTAGCCTCCCAGACATCCGCATCTGGTTATGA GTCAGAGGATCACCAGAAGCTTACTGCATTGACGTCATCGGGGGAAGCTCACGTGAACTCTCCTAATGTTAATGTGGCTATCCTTTCTGATATAACTGTT GCAAGTAGCAGAGAAGAACTGGAAACTGTTGATGTAGATACTCCTCCTAAGGTGGGTGCAGTTGAGATTGTTCCTGCACCTGTTGCAAGTAGCGGAGAAG AACTAGAACGTGTTGATTTGGATAGTCGGAGCGATCAAGTATCACATTTTGAACAAATGGAGGGCAAGGAGGAAGAGTGGACAAAAGAGAAACAATTGCT GGAAGAGGAGAATCAAAAGCTGAAAGAGGAGATTGCAGGTTTAATGGACAAATTAAAAATTGCGGAAGAGGAGACAGAATTTTGCAGGCTCAAACTCTAT GAGTTTGAATCTCATATGGAGAGCATTTGGCATGACTATAGCTCAAATGCAGATGAAACTAGAGATCTCACACAGATTGACCAATAG
AA sequence Show only first row Show all	>Lus10025229 pacid=23157397 polypeptide=Lus10025229 locus=Lus10025229.g ID=Lus10025229.BGIv1.0 annot-version=v1.0 MRRSTRRSISVAAPSEDEVRSIDLKKEDEVRSSDTDDETDLDADTREAVATEHSSLLASQTSASGYESEDHQKLTALTSSGEAHVNSPNVNVAILSDITV ASSREELETVDVDTPPKVGAVEIVPAPVASSGEELERVDLDSRSDQVSHFEQMEGKEEEWTKEKQLLEEENQKLKEEIAGLMDKLKIAEEETEFCRLKLY EFESHMESIWHDYSSNADETRDLTQIDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025229 [exp]	0	1
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10039718 [exp]	2.2	0.8324
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	4.2	0.8426
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	4.9	0.8102
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	8.2	0.8514
AT2G40435			unknown protein		Lus10025257 [exp]	10.9	0.8008
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	17.7	0.8230
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	19.9	0.8428
AT3G62200			Putative endonuclease or glyco...		Lus10038949 [exp]	20.3	0.7288
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	28.4	0.7929
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	30.0	0.8388

Compare expression of checked genes

Lus10025229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.