Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08770 106 / 4e-30 LTP6 lipid transfer protein 6 (.1.2) AT5G01870 104 / 2e-29 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G59310 91 / 3e-24 LTP4 lipid transfer protein 4 (.1) AT5G59320 89 / 3e-23 LTP3 lipid transfer protein 3 (.1) AT3G51590 89 / 3e-23 LTP12 lipid transfer protein 12 (.1) AT2G38540 85 / 8e-22 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) AT2G38530 74 / 2e-17 cdf3, LP2, LTP2 cell growth defect factor-3, lipid transfer protein 2 (.1) AT2G18370 71 / 1e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G51600 71 / 2e-16 LTP5 lipid transfer protein 5 (.1) AT2G15050 66 / 2e-14 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025148 [exp] 219 / 2e-74 AT5G01870 105 / 6e-30 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10000082 [exp] 123 / 1e-36 AT2G38540 88 / 2e-23 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Lus10022744 [exp] 122 / 1e-36 AT2G38540 86 / 1e-22 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Lus10022745 [exp] 91 / 3e-24 AT5G59310 103 / 1e-29 lipid transfer protein 4 (.1) Lus10014167 [exp] 89 / 2e-23 AT5G59310 102 / 2e-29 lipid transfer protein 4 (.1) Lus10025151 [exp] 89 / 4e-23 AT5G59320 103 / 1e-29 lipid transfer protein 3 (.1) Lus10015279 [exp] 87 / 2e-22 AT5G59320 116 / 6e-35 lipid transfer protein 3 (.1) Lus10025231 [exp] 86 / 7e-22 AT5G59320 99 / 5e-28 lipid transfer protein 3 (.1) Lus10029226 [exp] 82 / 1e-20 AT5G59310 94 / 3e-26 lipid transfer protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136000 [exp] 115 / 6e-34 AT5G01870 113 / 1e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135800 [exp] 114 / 3e-33 AT5G01870 111 / 1e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.004G086500 [exp] 108 / 5e-31 AT2G38540 124 / 5e-38 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086600 [exp] 107 / 8e-31 AT2G38540 122 / 3e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.001G232700 [exp] 93 / 5e-25 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 90 / 1e-23 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135500 [exp] 88 / 4e-23 AT5G59320 94 / 8e-26 lipid transfer protein 3 (.1) Potri.009G025200 [exp] 82 / 8e-21 AT2G18370 86 / 6e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135400 [exp] 80 / 6e-20 AT5G59320 109 / 3e-32 lipid transfer protein 3 (.1) Potri.006G108100 [exp] 79 / 1e-19 AT2G38540 121 / 6e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10025230 pacid=23157315 polypeptide=Lus10025230 locus=Lus10025230.g ID=Lus10025230.BGIv1.0 annot-version=v1.0 ATGGCGAGCTCTACTACTTCCTCTTCCTTGATCATTGCTGTGATGCTGGCTGTCACTTTGTTGATGGCAAAAGGAACCACGGCGGCTGTAAGCTGTGGTC AGGTGGTGAACACTCTGTATCCTTGCCTAACCTACGTTCAATACGGTGGGGGAATACCTGCTACTTGCTGCAACGGCATCAGGGCACTTAACAATGCTGC TGTAACCACCCCAGACCGCCAAGGAGTTTGCAACTGCCTCGTCTCGTCTCTCCGCGGATTCAACATCAGCCCTTACAGCCTTCGCCTTGCTGCTTCCCTC CCTGCTGGCTGCGGTGTCAACCTTCCCTACAGGATTGATCCTTCCATTGATTGCTCCAAGTATATATTGACAAAATCTATTCCTGTTTACATCAGGTCAG ATAAAAAGATGGCTTACAGAAGGGATGTGGAATGTGGCAGCGTTGAAGTACTAGGCTATGAAGTTATGTCAACGGTGAAATAA
AA sequence Show only first row Show all	>Lus10025230 pacid=23157315 polypeptide=Lus10025230 locus=Lus10025230.g ID=Lus10025230.BGIv1.0 annot-version=v1.0 MASSTTSSSLIIAVMLAVTLLMAKGTTAAVSCGQVVNTLYPCLTYVQYGGGIPATCCNGIRALNNAAVTTPDRQGVCNCLVSSLRGFNISPYSLRLAASL PAGCGVNLPYRIDPSIDCSKYILTKSIPVYIRSDKKMAYRRDVECGSVEVLGYEVMSTVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	0	1
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	1.4	0.9264
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	1.7	0.9179
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	6.0	0.9120
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	8.7	0.8745
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	9.9	0.8837
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	11.6	0.9205
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	14.8	0.8929
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	19.0	0.8946
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	20.7	0.8576
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	22.6	0.8458

Compare expression of checked genes

Lus10025230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.