Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 54 / 1e-09 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT1G69780 47 / 4e-07 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 46 / 6e-07 HD ATHB6 homeobox protein 6 (.1) AT5G65310 44 / 2e-06 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 44 / 3e-06 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT3G01220 44 / 5e-06 HD ATHB20 homeobox protein 20 (.1) AT1G27045 43 / 8e-06 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT5G15150 43 / 9e-06 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G03790 43 / 9e-06 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1) AT2G36610 39 / 0.0002 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036709 [exp] 147 / 5e-45 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 145 / 2e-44 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 91 / 3e-23 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 91 / 3e-23 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 53 / 3e-09 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 53 / 3e-09 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 53 / 4e-09 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 52 / 5e-09 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 50 / 5e-08 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G194400 [exp] 77 / 3e-18 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.012G070900 [exp] 61 / 4e-12 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.015G065400 [exp] 57 / 8e-11 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G071900 [exp] 49 / 9e-08 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 48 / 2e-07 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.008G148200 [exp] 47 / 3e-07 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.002G100600 [exp] 47 / 4e-07 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.010G093400 [exp] 47 / 4e-07 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.011G114500 [exp] 44 / 1e-06 AT5G53980 113 / 2e-32 homeobox protein 52 (.1) Potri.017G081700 [exp] 45 / 2e-06 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10025232 pacid=23157384 polypeptide=Lus10025232 locus=Lus10025232.g ID=Lus10025232.BGIv1.0 annot-version=v1.0 ATGGCGAGCGAAAACTCTTCGGCGTTAGCGGCGGCTTCGACCACCTCCCTTACTGGATCCCATCCATTTCCACCACTCTCTACGGTGAAATTTCAGACGG CGGCGAGGCAGATGGTGGAATACGAAAATGACAGGAATTTCTTCAATCCCATGGTGAAAGAAGAGCTCTACTGCGACGAGGATTTCGAAAACGGTTCAAG CCCTCGCTGCAAGAAGAGGCGGCTGACAGCGAGTCAGGTTCAGTTCCTGGATCGGAGCTTCAAGAACGAGAACAAGCTCGGGCCGGAGAGGAAGATCCAG CTCGCTAACAAGATCGGATTGTAG
AA sequence Show only first row Show all	>Lus10025232 pacid=23157384 polypeptide=Lus10025232 locus=Lus10025232.g ID=Lus10025232.BGIv1.0 annot-version=v1.0 MASENSSALAAASTTSLTGSHPFPPLSTVKFQTAARQMVEYENDRNFFNPMVKEELYCDEDFENGSSPRCKKRRLTASQVQFLDRSFKNENKLGPERKIQ LANKIGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	0	1
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	1.0	0.9217
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	2.4	0.9177
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	3.2	0.8673
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	5.3	0.8833
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	6.0	0.8971
AT5G22730			F-box/RNI-like/FBD-like domain...		Lus10027471 [exp]	6.7	0.8436
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	8.5	0.8671
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	10.2	0.8663
AT5G67390			unknown protein		Lus10011080 [exp]	11.0	0.8252
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	12.0	0.8317

Compare expression of checked genes

Lus10025232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.