Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 323 / 1e-105 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 161 / 5e-44 MAC/Perforin domain-containing protein (.1.2) AT1G28380 132 / 1e-33 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 130 / 8e-33 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029279 [exp] 330 / 4e-108 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 315 / 1e-102 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 286 / 2e-90 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 160 / 2e-43 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 160 / 2e-43 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 159 / 4e-43 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 159 / 4e-43 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 138 / 1e-35 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 138 / 2e-35 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135100 [exp] 430 / 3e-147 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 417 / 4e-142 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 333 / 1e-109 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 333 / 2e-109 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 164 / 7e-45 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 162 / 3e-44 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 160 / 1e-43 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 160 / 2e-43 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 151 / 2e-40 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 147 / 5e-39 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10025235 pacid=23157388 polypeptide=Lus10025235 locus=Lus10025235.g ID=Lus10025235.BGIv1.0 annot-version=v1.0 ATGGGAGAGAGTGGAGTTGGGACTGCGGCAGCGTTGCACACCGCAATCAACTCCGTTCAGGCGCTCGGGAGGGGTTTCGATGTCAACTTCGATACACGGT TGCTGTACTGCAAAGGAGTAGCTGGGTCTAGGGTTGTCCAGATTGACCAGGACCATACCAGAGATCTCTTTCTCTACGACGACGTTGTAGTACCTCGCGT TTCCAGGGATATCAGGAACTCCCCTGGCTCCCATGGCCGACAGAGTTCCGGTGTCTGCACTTTTCCCGAGAATACGGATGCGGGAATCTTTAACAGCCAG GGCATATACCCACAACCTACCACAACATATCTGACTGGGAAAGAGGATGTGACCGTCATTTTCCGAAGGAGGGGTGGAGATGATCTGGAGCAAAACCATA TCAGATGGGCAAGAACTGTGCGGGGTTCCCCAGATGTGGTGCATATGACTTTCGTCCCCATAACTGATCTTCTTAATACTCCTGGAAAGGGTCACCTTGC TCGAGCAATTGGTCTATATCTTGAATGTAGGGCTGCTAGGTTGCTTCACCATCATTACTTTTCTGATGTATCAGTGGGTCGGAAGCCGGTAACAGGATTA CGGTTATGCCTGGAAGGAGCTAAACAGAACAGATTAAGCATTCATGTTCAGCATTTAGTATCTCTACCGAAAATCCTCCTTCCCTACTGGGATACCCACG TGGCAATTGGTGCTCCAAAGTGGCAGGGCCCCGAGGAGCAGGACAGTAGATGGTTCGAGCCAGTGAAGTGGAAGAACTTCTCCCATGTGAGCACTGCACC GATGGAGAACCCAGAAAGCTTCATAGGCGACAATATCGGGGTGTTTGTAGTTACAGGAGCTCAGCTTGGAGTGTGGGATTTCGGGTCAAGAAAGGTCTTG TACATGAAGCTCCTGTATTCGCGTTTGCCCGGTTGTACAATACGAAGGTCGTTGTGGGACCATTCACCGAATAATAACAAGGTAAACAAACAATTGCCGA GTGTAAATAGCAACAATGCAGGAGGAGGAGGGGATTCAAGTTCAGGGGAGGCGGCGGAGAGCCATCACTCTGGAGGGAAGAAGTTGATGAAGTTTGTGGA CATGTCGGAGATGAGTAAAGGGCCGAAAGATCCTCCGGGGCATTGGTTGGTAACAGGAGGGAAGCTGGGAGTGGAGAAAGGCAAGGTTGTGGTGAGAGTA AAGTACTCGTTGTTGAACTACTGA
AA sequence Show only first row Show all	>Lus10025235 pacid=23157388 polypeptide=Lus10025235 locus=Lus10025235.g ID=Lus10025235.BGIv1.0 annot-version=v1.0 MGESGVGTAAALHTAINSVQALGRGFDVNFDTRLLYCKGVAGSRVVQIDQDHTRDLFLYDDVVVPRVSRDIRNSPGSHGRQSSGVCTFPENTDAGIFNSQ GIYPQPTTTYLTGKEDVTVIFRRRGGDDLEQNHIRWARTVRGSPDVVHMTFVPITDLLNTPGKGHLARAIGLYLECRAARLLHHHYFSDVSVGRKPVTGL RLCLEGAKQNRLSIHVQHLVSLPKILLPYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPMENPESFIGDNIGVFVVTGAQLGVWDFGSRKVL YMKLLYSRLPGCTIRRSLWDHSPNNNKVNKQLPSVNSNNAGGGGDSSSGEAAESHHSGGKKLMKFVDMSEMSKGPKDPPGHWLVTGGKLGVEKGKVVVRV KYSLLNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	0	1
AT1G02070			unknown protein		Lus10009267 [exp]	1.0	0.9046
AT5G43100			Eukaryotic aspartyl protease f...		Lus10018709 [exp]	2.2	0.8822
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	2.4	0.8923
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	2.8	0.8714
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	3.2	0.8954
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	4.0	0.8866
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	4.6	0.8723
AT2G13100		AtG3Pp5	glycerol-3-phosphate permease ...		Lus10040002 [exp]	5.5	0.8480
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	9.2	0.7870
AT4G09580			SNARE associated Golgi protein...		Lus10017913 [exp]	9.3	0.8178

Compare expression of checked genes

Lus10025235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.