Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01850 463 / 3e-164 Protein kinase superfamily protein (.1) AT3G27560 353 / 1e-120 ATN1 Protein kinase superfamily protein (.1) AT5G40540 352 / 3e-120 Protein kinase superfamily protein (.1) AT5G50180 346 / 4e-118 Protein kinase superfamily protein (.1) AT5G66710 260 / 1e-83 Protein kinase superfamily protein (.1) AT1G62400 230 / 1e-72 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 223 / 7e-69 Protein kinase superfamily protein (.1.2.3.4) AT3G50730 221 / 7e-69 Protein kinase superfamily protein (.1) AT3G50720 220 / 2e-68 Protein kinase superfamily protein (.1) AT2G24360 216 / 3e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025154 [exp] 662 / 0 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10032086 [exp] 358 / 7e-123 AT5G50180 565 / 0.0 Protein kinase superfamily protein (.1) Lus10035233 [exp] 358 / 2e-122 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10026034 [exp] 267 / 2e-86 AT5G66710 342 / 1e-115 Protein kinase superfamily protein (.1) Lus10020018 [exp] 229 / 7e-72 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 224 / 2e-69 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10015541 [exp] 229 / 3e-68 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10025442 [exp] 218 / 3e-66 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10011173 [exp] 218 / 3e-66 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134900 [exp] 491 / 8e-175 AT5G01850 487 / 3e-174 Protein kinase superfamily protein (.1) Potri.017G065500 [exp] 358 / 1e-122 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.001G343900 [exp] 354 / 6e-121 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 230 / 9e-72 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 228 / 2e-71 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 227 / 4e-71 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 228 / 1e-70 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001900 [exp] 225 / 1e-69 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 220 / 9e-69 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 222 / 1e-68 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10025236 pacid=23157331 polypeptide=Lus10025236 locus=Lus10025236.g ID=Lus10025236.BGIv1.0 annot-version=v1.0 ATGAGCTACAGAAGAGAGAGGAACGGGGGAGGAGCAGACGTTGAAGATGGTTACGGACGGCGGTCAGTTGGAAGGTCTACGGAGAGACAATCAAAATCTG GCTCGGGAAACGGTTCGATCATATCTCCACGACAGTCGATTGACGAGACTCGTCTCATTGACGCTAATTCGTTGTTTATTGGACTGAAAATTGGCGAGGG AGCTCATGGGAAGGTCTATGAAGGAAGATTCGGTGAGCGAGTTGTTGCGATCAAAGTTCTCCACCGTGGTAGCACTTCTGATGAAAGGTCAGCGCTTGAG AATCGGTTTGCCCGGGAAGTAAACATGATGTCCAGGGTTAAACACGAGAATCTTGTCAAGGTGAGTAGCACCTCGCAGTTTATTGGAGCTTGCAAAGATC CTTTGATGGCAATCGTAACCGAGCTGCTGCCTGGGATGTCTCTACGCAAGTATCTCACAAGTATCCGTCCAAACAAATTAGAGCTTCCTTTAGCCTTGAG CTTTGCCCTTGATATTGCTCGTGCTTTGGATTGTCTGCATGCTAACGGGATCATACACAGAGATCTTAAACCAGATAACCTGTTGCTAACAGCAGATCAG AAGTCTGTGAAGCTTGCAGATTTTGGACTAGCAAGGGAAGAAACTGTGACTGAGATGATGACTGCAGAGACAGGAACCTACCGTTGGATGGCTCCAGAGG GAGAGAAAAAACATTACAACAACAAGGTCGACGTCTACAGTTTTGGGATCGTTCTGTGGGAACTACTGACAAACCGCATGCCATTTGAAGGCATGTCAAA TTTGCAAGCTGCTTATGCTGCCGCGTTTAAGCAAGAGAGGCCTAGCATGTCAGATGATATACCTCCAGAGTTAGCGTTCATCATACAGTCATGCTGGGTG GAGGACCCTAACATGAGGCCAAACTTCAGCCAGATCATACGAATGCTGAACGCATTCCTTTTCACACTCTCACCGCCACCACCCTCCTCGGAACTAAAAC CCGAACCGAACGAACAAGACGAACGAGAAGCAGCTGCTACTCCTTCAAGTAATGGCTACGTGACGGAGTTCTCCGCCCGGGCTAGGGGAAAGTTTAGTTT CCTTAAGCAACTGTTCGCTGCCAAGAGGACAAAGAACTCCCAGTGA
AA sequence Show only first row Show all	>Lus10025236 pacid=23157331 polypeptide=Lus10025236 locus=Lus10025236.g ID=Lus10025236.BGIv1.0 annot-version=v1.0 MSYRRERNGGGADVEDGYGRRSVGRSTERQSKSGSGNGSIISPRQSIDETRLIDANSLFIGLKIGEGAHGKVYEGRFGERVVAIKVLHRGSTSDERSALE NRFAREVNMMSRVKHENLVKVSSTSQFIGACKDPLMAIVTELLPGMSLRKYLTSIRPNKLELPLALSFALDIARALDCLHANGIIHRDLKPDNLLLTADQ KSVKLADFGLAREETVTEMMTAETGTYRWMAPEGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSMSDDIPPELAFIIQSCWV EDPNMRPNFSQIIRMLNAFLFTLSPPPPSSELKPEPNEQDEREAAATPSSNGYVTEFSARARGKFSFLKQLFAAKRTKNSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	0	1
AT3G50910			unknown protein		Lus10014290 [exp]	1.4	0.8580
AT5G01850			Protein kinase superfamily pro...		Lus10025154 [exp]	2.8	0.8208
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	5.5	0.8249
AT3G50910			unknown protein		Lus10025996 [exp]	8.1	0.7973
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10035099 [exp]	9.9	0.8138
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10025944 [exp]	10.6	0.7741
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	11.4	0.8346
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	11.9	0.8347
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	12.4	0.8116
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	13.6	0.8261

Compare expression of checked genes

Lus10025236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.