Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38510 619 / 0 MATE efflux family protein (.1) AT1G58340 409 / 2e-137 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 397 / 1e-132 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 383 / 2e-127 MATE efflux family protein (.1) AT5G52050 379 / 8e-126 MATE efflux family protein (.1) AT4G23030 368 / 7e-122 MATE efflux family protein (.1) AT1G71870 347 / 9e-114 MATE efflux family protein (.1) AT5G49130 308 / 1e-98 MATE efflux family protein (.1) AT5G52450 227 / 1e-67 MATE efflux family protein (.1) AT2G34360 215 / 2e-63 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025156 [exp] 755 / 0 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 429 / 2e-145 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 410 / 3e-137 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10027417 [exp] 410 / 3e-137 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 398 / 5e-133 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 358 / 2e-117 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10009788 [exp] 322 / 9e-104 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 245 / 2e-74 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 236 / 5e-71 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134800 [exp] 653 / 0 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 442 / 4e-150 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 440 / 1e-149 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 436 / 7e-148 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 407 / 2e-136 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 373 / 1e-123 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 372 / 1e-123 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 365 / 4e-120 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.010G011400 [exp] 352 / 1e-115 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 258 / 3e-79 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10025237 pacid=23157387 polypeptide=Lus10025237 locus=Lus10025237.g ID=Lus10025237.BGIv1.0 annot-version=v1.0 ATGTGCACCGGAAGTGGTGCTGAGTCTCGAGGAGGAGGAGGAGGAGGAGGAGGAATTATAAATAGTGACAATTGGATATCCAAAGCTGATGGTGATCAAG ATGATGGGGAGGCCGAAGATCAGGATCATCATCTTATTTCTGGTGTGGCAGAGTCATCAATGAAATCAAGAACCAGCGGCGGTGGCGGCGAAACTAGTAA GTTGTTCCATGGTATCATCCGCCGCCTCCCTCTCAATGCCCACTTCGGCCAGCTCCCGCTACACGAGGTGGGAGAAGAGGTACTCTCATTGGGAAGGATT GCTTGCCCCATAATCCTGACGACCTTGCTTATACACTCAAGATCAATTGTCTCAACACTATTCTTGAGTCATTTGGGGGAGATAGAATTGGCAGGTGGCT CCCTAGCATTGGGATTTTACAACATCACAGGAGTCTCCATCATGAAAGGCTTATCAGTAGGGATGGATCCCATCTGCGGCCAAGCCTTTGGTGCCAAGAG ATGGGCAGTTCTCAGCCAGACTTTCCAGAAAATGCTGTGTCTTCTCCTTTTCGCTTCTACATTACTAATCTGCCTTCTATGGCTCAACTTGGAGCCCATA TTCCTCAGATTCGGTCAGGATCCCGACATCATCAAATTCGCCAAGGTCTACATCATCTACTGCATCCCTGAACTCATAGCTCAAGCCATCCTCCATCCCA TGAGATCCTTCCTCAGGACTCAAGGGTTGACCACTCCTCCAACTATAGCAGCAATCATTGCAGCCATCCTCCACACGCCGATCAACTACATTCTAGTCAT AAAACTCAACCTTGGTGCGAAAGGAGTCGCCTTGGCTCTGGCTTGCAGCACCATGAACATGAACATTGGACTTTTGATATACATGGCCGTTTCGCCAAAG CCAATCAAGCCATGGCGTGGATTGACATTCATCTCAATGTTCCAAGGCTGGTGGCCTTTGTTATCTCTAGCATTGCCTTCTGTAATATCGGTCTGCCTCG AATGGTGGTGGTACGAGATAATGCTATTCCTCTGCGGCTTACTCAGCAACCCGAAAGCCAGCGTATCAGCCACAGGGATCCTCATCCAGACGACGGGTTT GCTGTACGTTTTCCCGTTTTCTCTGAGTTCGGGGTTGAACATTAGAGTGAGTCACGCTCTGGGTGCAGGACAGCCAACTCGGGCACAATGGACAACCATA ATTGGGATCACTCTGGCATTTGGGTATGCAGTCATAGCCTGTGTTTTCACAGCTCTCTTAAGATCAGATTGGGGGAAGATGTACACGTCGGATCCAGAGG TTATAGAGATGATCTCGATCGGACTTCCCATAGTCGGGTTGTGTGAACTAGGGAACGCACCTCAAACAGCAGCGTGTGGAGTCTTGACTGGGACAGCTCG TCCTAAAGAAGGCGCCCGGATAAACTTGTTTGCATTTTACTTGGTGGGTTTCCCAGTAGCGCTTCTCCTCACGTTCCAATGCAACATGGGTTGTCGAGGG TTGTGGCTTGGGTTATTCTCAGCACAGATTGCGTGTGTTTCGATGATGCTATACACCATCCTTGGAACAGATTGGAAACATCAGGCTAAAAGGGCTGAGG AGTTGACTGCTGCTGTGGGAGAACGGGACGATTTGGAAGATGGCTTGCTCCCTCCTGCTGCAGCTAGTAACAATGAACATCAATAA
AA sequence Show only first row Show all	>Lus10025237 pacid=23157387 polypeptide=Lus10025237 locus=Lus10025237.g ID=Lus10025237.BGIv1.0 annot-version=v1.0 MCTGSGAESRGGGGGGGGIINSDNWISKADGDQDDGEAEDQDHHLISGVAESSMKSRTSGGGGETSKLFHGIIRRLPLNAHFGQLPLHEVGEEVLSLGRI ACPIILTTLLIHSRSIVSTLFLSHLGEIELAGGSLALGFYNITGVSIMKGLSVGMDPICGQAFGAKRWAVLSQTFQKMLCLLLFASTLLICLLWLNLEPI FLRFGQDPDIIKFAKVYIIYCIPELIAQAILHPMRSFLRTQGLTTPPTIAAIIAAILHTPINYILVIKLNLGAKGVALALACSTMNMNIGLLIYMAVSPK PIKPWRGLTFISMFQGWWPLLSLALPSVISVCLEWWWYEIMLFLCGLLSNPKASVSATGILIQTTGLLYVFPFSLSSGLNIRVSHALGAGQPTRAQWTTI IGITLAFGYAVIACVFTALLRSDWGKMYTSDPEVIEMISIGLPIVGLCELGNAPQTAACGVLTGTARPKEGARINLFAFYLVGFPVALLLTFQCNMGCRG LWLGLFSAQIACVSMMLYTILGTDWKHQAKRAEELTAAVGERDDLEDGLLPPAAASNNEHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	1.7	0.8338
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	3.5	0.8162
AT1G78922			unknown protein		Lus10035715 [exp]	3.9	0.8130
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	4.9	0.7619
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	5.0	0.7808
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	11.0	0.7433
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	13.5	0.7428
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	13.5	0.7645
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	14.9	0.7429
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	21.2	0.7731

Compare expression of checked genes

Lus10025237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.