Plant FIBer expression Database

Lus10025238 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51610 328 / 3e-115 NPU NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006096
[exp]
421 / 9e-152 AT3G51610 335 / 7e-118 NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G134700
[exp]
351 / 2e-124 AT3G51610 330 / 7e-116 NO PRIMEXINE AND PLASMA MEMBRANE UNDULATION, unknown protein
PFAM info
Representative CDS sequence
>Lus10025238 pacid=23157446 polypeptide=Lus10025238 locus=Lus10025238.g ID=Lus10025238.BGIv1.0 annot-version=v1.0
ATGGCGGCGACCGGGGAACGATGTCGGAGCAGAATTGCTATGGTCGTTCTGCTGATACTGTCACTCTCGTCTTTTTCAACGGCATACCGTCCGGGAGACA
TCATTCCGATGAGCAAGATGGGGCAATACCACTCGTCCAGAACGATGTGGCATGATATGATCGGCAAGCATTGCCCCATTTTTGCCGTCAATCGCGAGGT
GTTGGTACCTATCGCAAAGCCCACGGGTTACACTGGTGCAGATCCTTACAAGATATCGTTTCAAGTTGGAAGAGAAAAATTTCAAACTCCATGGCTTTAT
GTGATAAACAGGAAAAGTGCCGAGGTCCCTATGATTGATGTGCATTTGAGATATGCAGGTGGTGATTTGCACGGGATCACTGCGAAAGTCGTAGATATGC
CTCATCACTATGTGGAAACACACCCCAACATCCGTAAACAATTTTGGGATCCTCAGCATTGGCCCAAACACGTTCTCGTAAGATACAGTTGGGAGCAACA
TTCTGATGTGGATGTCACTGCCGGTTTCTATGTTTTGTTCGGATCAGGCCTTATGATGTCTTTCATTCTTTCAATTTACATCCTGCAGTCCTCAAGGGAC
AAATTGACAAGGTTCGTAAGGGAGACAGTTGTAGAAGGTGGCAGTTCTTCCCGGGGGGTCGCGAAGGTTGAATGA
AA sequence
>Lus10025238 pacid=23157446 polypeptide=Lus10025238 locus=Lus10025238.g ID=Lus10025238.BGIv1.0 annot-version=v1.0
MAATGERCRSRIAMVVLLILSLSSFSTAYRPGDIIPMSKMGQYHSSRTMWHDMIGKHCPIFAVNREVLVPIAKPTGYTGADPYKISFQVGREKFQTPWLY
VINRKSAEVPMIDVHLRYAGGDLHGITAKVVDMPHHYVETHPNIRKQFWDPQHWPKHVLVRYSWEQHSDVDVTAGFYVLFGSGLMMSFILSIYILQSSRD
KLTRFVRETVVEGGSSSRGVAKVE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51610 NPU NO PRIMEXINE AND PLASMA MEMBRA... Lus10025238
[exp]
0 1
AT3G13200 EMB2769 EMBRYO DEFECTIVE 2769, Cwf15 /... Lus10016651
[exp]
14.2 0.8858
AT4G27290 S-locus lectin protein kinase ... Lus10014809
[exp]
20.6 0.8809
AT1G35620 ATPDI8, ATPDIL5... ARABIDOPSIS THALIANA PROTEIN D... Lus10016798
[exp]
23.2 0.8743
AT1G16810 unknown protein Lus10034837
[exp]
26.1 0.8601
AT4G36800 RCE1 RUB1 conjugating enzyme 1 (.1.... Lus10026038
[exp]
34.6 0.8563
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Lus10001237
[exp]
56.2 0.8454
AT5G52210 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) Lus10014991
[exp]
58.3 0.8405
AT2G14260 PIP proline iminopeptidase (.1.2) Lus10035652
[exp]
71.4 0.8169
AT5G11970 Protein of unknown function (D... Lus10021581
[exp]
86.0 0.8192
AT2G29960 CYP19-4, ATCYP5... CYCLOPHILIN 19-4, ARABIDOPSIS ... Lus10018238
[exp]
89.5 0.8076

Lus10025238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.