Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 675 / 0 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G61690 421 / 3e-130 nucleotidyltransferases (.1) AT3G56320 402 / 4e-130 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 348 / 6e-111 Nucleotidyltransferase family protein (.1.2.3.4) AT2G39740 74 / 1e-13 HESO1 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006095 [exp] 1507 / 0 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006094 [exp] 889 / 0 AT3G51620 259 / 6e-77 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10022746 [exp] 847 / 0 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10014166 [exp] 676 / 0 AT3G51620 539 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 428 / 5e-141 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 431 / 9e-134 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10042221 [exp] 407 / 3e-131 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030265 [exp] 428 / 1e-129 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 397 / 5e-125 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154900 [exp] 504 / 5e-167 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 480 / 1e-157 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 436 / 1e-135 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 432 / 3e-134 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 430 / 2e-133 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 422 / 2e-130 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 404 / 4e-130 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 77 / 2e-16 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025239 pacid=23157415 polypeptide=Lus10025239 locus=Lus10025239.g ID=Lus10025239.BGIv1.0 annot-version=v1.0 ATGGGCGATCTTCGACCGTGGTCACCAGAAGTTAACGGCGGCGAAGTCGCTGAGGAGAGGCCATCGTCTTCTTCTTTGCCGTCCGCGCCGATTGGTGCGG CGAACTGGAAGAGAGCCGAGGCGGCGGCACAGCTGATCATTGCGCAGGTGCAGCCGACTCTCGTCTCGGAAGAGAGGAGAAAAGCTGTTGTTGATTACGT CCAGCGGCTGATTAGAAATTCCATTGGTTGCGAGGTACTCCCTTTTGGATCAGTTCCATTGAAAACCTATCTTCCTGATGGAGACATTGATTTGACAGCC TTTGGTGGTGCAAACATGGAGGAATCGATGGCTAATGATGTGCGGTCTATACTTGAGATGGAAGATCAGAACACTGCTGCAGAGTTTGTAGTAAAGGACG TCCAATTGATTAGGGCGGAGGTTAAGCTTGTAAAATGTTTGGTGCAGAACATTGTAGTTGATATATCCTTCAATCAATTAGGAGGTCTCTGTACTTTATG TTTTCTGGAGGAGGTTGATCGCGTTATCGGCAGAGACCATATTTTCAAGAAAAGCATTATATTGATAAAGGCCTGGTGCTATTATGAGAGCCGCATTCTT GGAGCACATCATGGCTTAATATCTACATATGCTTTGGAAACGTTGGTTCTTTACATATTCCAGTGCTTCCACTCATCACTTGATGGTCCTCTAGCTGTTT TGTATAAATTTTTAGAGTATTTTAGCAAATTTGACTGGGATAGCTTCTGCATCAGTTTGAATGGCCCAATCAGAACATCCTCATTGCCAGAAGTTGTAGT GGATTTTTCTGACAATGATGGATTTGATCCACTGCTCAGTCATGAATTCCTCAAAGAGTGCGCAGACAGGTTCTCTGTTCCTGTCAGTGGATCTGATATA AACCCCCGTCTGTTTCCTCCTAAGCATCTCAATATCGTTGATCCATTGAAAGAAAACAACAACCTTGGTCGTAGTGTGAGCAAAGGGAACTTCTACCGAA TAAAAAGCGCTTTTGGCTATGGTGCTCGAAAGCTAGGACGCATTCTTTCACAGCCAGAATTAAATGTAGCTGAAGAACTCAGTAGATTCTTTTTCAACAC TTTGCATAGGCATGTAAGCGGACAGAGGCCTGATGTTCAAGATCCTTACTGTAGATACAGTGCCGGGTCAACATTTCCAGGTTCTGAAACATGGGAAGAC AACCAGAGAAATTTTGAATCAGAGTTTGCTGAAGCAAGTGGCATAAACGGGGAATGCAGATGTGATACTGAACTTACATTGCAGAATGGCAACATTGTTG GGTTACCAGATGCAGAAACGAATTCAAACAAAAACACCCTTGAAGCATACAATTCTGGAAATGGGTGCTTGATTTCACAACATCGTCTCTCTGGTGATGC AAAAGATCTCGCAACTTCTAGGATCCAACATCTATCCATTTCAAATGACGGAACAAGATATTTTGCTCAGTCAGCTGCGGAAAACGGTGATGTGATAAAT GGGAATCCTGAACTAACGGAACTAGACAGTTCCGAATTCAATGGCAAGAGAATATCCTCTCACGTCCTGTCTTCTGCAGTTGATGAGACAACCCCTGTTG TAAGCAATGGCCTAGATGAGAACCATGTCTCTAGTGACCTTGAGGTTCTGTCTCCTGCTGGATCATTAAACCATATGTCATCAACTCCAGTTGAATATCC TTCCGAAAGTATTTATCCTAGTCAGTTAAGCTGTCAGTCTTCAGCTAGTAATGCTGGAACCCTGGAAGCATCGAACTCCTTGTCAGATCTAAGTGGTGAT TATGAAAGTCACCTGCATAGTTTGGGCCATGGCCGGTGGTGGTATGATTACACACCAAGTTCTCCAGTTCCTCCTATGTCTCCTAAGATGTTAGCTCACT TCCAGAGCAAGAACTCTTGGCATGGAATGAGACGAGCTCCCCATTACAGGCAGAATGCAAATGGTGTTGCCCTAAGACCTGTGTTCAATGCAATTAATGT ACCGTTAATACGTGGTGCGATGTTTGGTACGGAAGAAGTTTCCAGACCGCGAGGAACTGGAACATATTTCCCCAATGTGAACCACTACAATGAAAGGCCT TTCACACCAAGGGGAAGAAGCCAAGTGCCACTAAGGTCTCCTCGTAGTAATGGCAGAATTGCCCCTTTCCATGAGTCAAAAGTTCCAGATAGAAGCAGCC ATGAGTTGCCACAGTGGCACAATCATCTAGATGGCTGGAAATCACCGTCATTAGACTCTCATCATGTTGAACCCAATCCATACTCCAACGTCAATGGTGT AACACATTCTGCATATAGGATCGTGGAGTTTGGGTCGATTGGACATCTGGATGTGTTTCGTTTGATATGGTCCCTGTTAAAGGGCGAGGAGGATTCCCCG CCATTGTCTGAGAATGGCGGGAAGGGATCAGCTGTGTGGATCCCTAACAAGCCTGAGAGACAAAAGAGCAGCGACTGGTAA
AA sequence Show only first row Show all	>Lus10025239 pacid=23157415 polypeptide=Lus10025239 locus=Lus10025239.g ID=Lus10025239.BGIv1.0 annot-version=v1.0 MGDLRPWSPEVNGGEVAEERPSSSSLPSAPIGAANWKRAEAAAQLIIAQVQPTLVSEERRKAVVDYVQRLIRNSIGCEVLPFGSVPLKTYLPDGDIDLTA FGGANMEESMANDVRSILEMEDQNTAAEFVVKDVQLIRAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEEVDRVIGRDHIFKKSIILIKAWCYYESRIL GAHHGLISTYALETLVLYIFQCFHSSLDGPLAVLYKFLEYFSKFDWDSFCISLNGPIRTSSLPEVVVDFSDNDGFDPLLSHEFLKECADRFSVPVSGSDI NPRLFPPKHLNIVDPLKENNNLGRSVSKGNFYRIKSAFGYGARKLGRILSQPELNVAEELSRFFFNTLHRHVSGQRPDVQDPYCRYSAGSTFPGSETWED NQRNFESEFAEASGINGECRCDTELTLQNGNIVGLPDAETNSNKNTLEAYNSGNGCLISQHRLSGDAKDLATSRIQHLSISNDGTRYFAQSAAENGDVIN GNPELTELDSSEFNGKRISSHVLSSAVDETTPVVSNGLDENHVSSDLEVLSPAGSLNHMSSTPVEYPSESIYPSQLSCQSSASNAGTLEASNSLSDLSGD YESHLHSLGHGRWWYDYTPSSPVPPMSPKMLAHFQSKNSWHGMRRAPHYRQNANGVALRPVFNAINVPLIRGAMFGTEEVSRPRGTGTYFPNVNHYNERP FTPRGRSQVPLRSPRSNGRIAPFHESKVPDRSSHELPQWHNHLDGWKSPSLDSHHVEPNPYSNVNGVTHSAYRIVEFGSIGHLDVFRLIWSLLKGEEDSP PLSENGGKGSAVWIPNKPERQKSSDW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	0	1
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	1.7	0.8512
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	2.6	0.8597
AT4G30790			unknown protein		Lus10007700 [exp]	2.8	0.8473
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	4.5	0.8570
AT5G10370			helicase domain-containing pro...		Lus10023162 [exp]	5.5	0.8022
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	6.5	0.8409
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	6.9	0.7989
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	8.9	0.8215
AT4G23460			Adaptin family protein (.1)		Lus10017508 [exp]	10.2	0.7846
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	10.9	0.8281

Compare expression of checked genes

Lus10025239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.