Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38500 123 / 6e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03400 42 / 0.0003 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006093 [exp] 394 / 7e-138 AT2G38500 179 / 1e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G134500 [exp] 133 / 1e-36 AT2G38500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G095600 [exp] 42 / 0.0002 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025240 pacid=23157318 polypeptide=Lus10025240 locus=Lus10025240.g ID=Lus10025240.BGIv1.0 annot-version=v1.0 ATGTCCTCCTCAACTGACACCACCACCACCACCAACAACAACAACAACAACAACAATAATACAGTTACAGCAACCTCGCCCCCGGCCAAAGCGTGTCCGC ACGACCCGGAGGACATAAGCCTGCCGTCTATTCGGTCCAGGGATGCGTCTGCGGTGGATCGGCTACTTAGATCTGCGAGGGAGTTCGGGACGTTCAGGGT GACGGATCACGGGATCTCGAGCGAGGAGCTGAGGTCCTTGGTGCAAGGTGCGGAGCGGGTTTTCCAGGTTCTTGAAGATACCGACATGGGCCACCCTCCT AGGAATTTCGCTAGGTTGAGGGAGTCCAGGGAGCAGATCGAGTGGGTCCGCTCCGGTGAGGAGCGGATGGAGTGGGCCCGTGGCTGGGTCGGCCGCGACG GATCCCGACGATTCGGGGAAGTGATGGAGAAGATAGCGATGAAACTCGACGCGATCGGGAAGATGATATGCGAGGTGTTCTCCGAAAACTGGACGAAACG ACAATTCGGTAGGAGATTCGAGGAGAAAGATTCATTGGTGAGGCTATACAGATACAACCGCAGCAGCACGGGGGAAAACATAGTTGAAGCCGTAGTCAAC CCGGAGATGGAAGACGGAAGCGGATGCCACGCTGTCTGCCTCCACCTCCCGGCTTCCCCTTCACACTTCCTCCTCAACTCCTCCCCGTCCCTCTTGTCCT TCAACGCCGCGGCCCGCAAGCCATCGTCGTCTCCGTCGGGCGGCGCTTGCAGGAATGGAGCTTGGGAGACTTCAAGTGTATATCGGGGGAAGTTATGTGC TGGCCAAAGCCGGAAGAGCAGCCGCCGTGTTTCTCGGTGGAGCTGA
AA sequence Show only first row Show all	>Lus10025240 pacid=23157318 polypeptide=Lus10025240 locus=Lus10025240.g ID=Lus10025240.BGIv1.0 annot-version=v1.0 MSSSTDTTTTTNNNNNNNNNTVTATSPPAKACPHDPEDISLPSIRSRDASAVDRLLRSAREFGTFRVTDHGISSEELRSLVQGAERVFQVLEDTDMGHPP RNFARLRESREQIEWVRSGEERMEWARGWVGRDGSRRFGEVMEKIAMKLDAIGKMICEVFSENWTKRQFGRRFEEKDSLVRLYRYNRSSTGENIVEAVVN PEMEDGSGCHAVCLHLPASPSHFLLNSSPSLLSFNAAARKPSSSPSGGACRNGAWETSSVYRGKLCAGQSRKSSRRVSRWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10025240 [exp]	0	1
					Lus10025367 [exp]	4.9	0.8406
					Lus10000529 [exp]	5.2	0.8794
					Lus10005514 [exp]	7.3	0.8794
AT2G04865			Aminotransferase-like, plant m...		Lus10014633 [exp]	9.0	0.8794
AT5G27260			unknown protein		Lus10007175 [exp]	10.4	0.8794
					Lus10008001 [exp]	11.6	0.8794
AT5G22210			unknown protein		Lus10043407 [exp]	11.6	0.7805
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037633 [exp]	12.7	0.8794
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	13.7	0.8794
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	14.7	0.8794

Compare expression of checked genes

Lus10025240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.