Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06920 109 / 2e-27 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 101 / 1e-24 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT2G30400 100 / 3e-24 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G58360 97 / 9e-23 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT4G18830 86 / 9e-19 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G19650 76 / 5e-16 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 72 / 4e-14 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 67 / 2e-13 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 64 / 5e-12 OFP Ovate family protein (.1) AT2G36030 59 / 4e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006092 [exp] 409 / 3e-143 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10014164 [exp] 137 / 8e-39 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10008589 [exp] 102 / 2e-24 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 102 / 3e-24 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10015236 [exp] 95 / 2e-21 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10011092 [exp] 90 / 3e-20 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 89 / 8e-20 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 74 / 2e-14 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 69 / 2e-13 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107700 [exp] 162 / 1e-46 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G134200 [exp] 161 / 9e-46 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.013G155200 [exp] 119 / 4e-30 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 116 / 3e-29 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 108 / 2e-26 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G156176 [exp] 87 / 2e-19 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 86 / 7e-19 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.002G262500 [exp] 80 / 1e-16 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.009G161700 [exp] 75 / 7e-16 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.007G028000 [exp] 78 / 8e-16 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10025241 pacid=23157448 polypeptide=Lus10025241 locus=Lus10025241.g ID=Lus10025241.BGIv1.0 annot-version=v1.0 ATGATGCCCAACGCCTGGTTCTACAAGCTCAGAGACTTCAACGCCGCCGCCCACAAAAAACCCCCCAACAAACCCAAGTTGTCACATTTACCCACTTCCA CTACTCCACACCCTTCAAAACCAGATCATCAAACCCAACAACAACATTACTCCTACTCCAGAAAGTCTTACCATTTCACCAGAGACCTTAATCTCCGCCA CGACAGAAAATCCTCCGCCGGCCAAAGATCCAATCGTAGGACTTCTACTACTACTGCCAGGTTATCTCCCAAGTTTGTTTCTTCCTCCTCCTCTGTTCCC AATCGGCCTAAACCCGAACCTCCGTTGCCGGATTACTCTGCTTCACTCTCCGATTCCGACTCTTTTTCGCCGGAATTCAGGTCTGACTGTTCTCTCACCA CTGAATCGTTTGACAAGAAGGTGTCCTGGTCCAGCAACTCATGCGGCTGTCCTCTGGAGTTGGTTGATTCATCTAGTGCTAGTAGCGACATTATCATCGA CGTCGATAAACATTCTCTGTCTACCAAAAAACACGCACCCCAGGTGTTCGATCATTTGCCCGACCTTCATCTCTCTCCAATTTTGACCAAAAAGGAGACC AAAGATCAATCCACGACGAAACAGAGTACTGGGAGGAAGCATTATTACGGCGGCGGGAATAATTCTTCTCCGGGGATAAAGCTACGGGCTAACTCTCCCA GAATCGGGTGTCAGTACCGGAGAAAAAATCAAATGCAGGGAGGACGGAAGAGCTTGTCGTCGGAGAGATCATCACCATCATCATCATCAAGGAGGAGGAT GAGTAAAACGGTGTCGTCTGGTTGCTTGGCAGTGGTGAAATCGTCGTACGATCCGCAGAGGGATTTCAGGGAGTCGATGGTGGAGATGATTGTGGAGAAG AACATCAGCGCGTCCAAAGATTTGGAAGACCTTCTCGCTTGCTATCTCTCTCTTAACTCCGATGAGTATCATGATGTCATCATCAAAGTGTTCAAACAAA TCTGGTTCGACTATCTAATTACCACTTCCAAATGA
AA sequence Show only first row Show all	>Lus10025241 pacid=23157448 polypeptide=Lus10025241 locus=Lus10025241.g ID=Lus10025241.BGIv1.0 annot-version=v1.0 MMPNAWFYKLRDFNAAAHKKPPNKPKLSHLPTSTTPHPSKPDHQTQQQHYSYSRKSYHFTRDLNLRHDRKSSAGQRSNRRTSTTTARLSPKFVSSSSSVP NRPKPEPPLPDYSASLSDSDSFSPEFRSDCSLTTESFDKKVSWSSNSCGCPLELVDSSSASSDIIIDVDKHSLSTKKHAPQVFDHLPDLHLSPILTKKET KDQSTTKQSTGRKHYYGGGNNSSPGIKLRANSPRIGCQYRRKNQMQGGRKSLSSERSSPSSSSRRRMSKTVSSGCLAVVKSSYDPQRDFRESMVEMIVEK NISASKDLEDLLACYLSLNSDEYHDVIIKVFKQIWFDYLITTSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10025241 [exp]	0	1
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	6.3	0.7089
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	15.0	0.7635
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	17.1	0.6852
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10026730 [exp]	22.7	0.7107
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007799 [exp]	23.6	0.6684
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036526 [exp]	29.7	0.6518
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10022493 [exp]	31.8	0.7026
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10019650 [exp]	43.3	0.6200
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015283 [exp]	47.8	0.6710
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	52.0	0.6524

Compare expression of checked genes

Lus10025241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.